RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DNAAF1Q8NEP3 725 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ZMYND19Q96E35 227 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 APOBEC3BQ9UH17 382 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 NPC1O15118 1278 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 FRS3O43559 492 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 GJB3O75712 270 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 TFP02787 698 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 HMGN2P05204 90 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 CTSAP10619 480 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF14P17017 642 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 AOAHP28039 575 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 NKX3-2P78367 333 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 EGLN2Q96KS0 407 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ARHGAP9Q9BRR9 750 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 EIF5A2Q9GZV4 153 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 OTOL1A6NHN0 477 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 VSTM2BA6NLU5 285 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 GPR39O43194 453 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 C6orf132Q5T0Z8 1188 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 CPXM2Q8N436 756 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ASB11Q8WXH4 323 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 CPPED1Q9BRF8 314 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 AK6Q9Y3D8 172 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 TCRBV5S1A1TA0A578 114 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 MEIOCA2RUB1 952 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF850A8MQ14 1090 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 PRAF2O60831 178 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 RFPL3O75679 317 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 PRSS3P35030 304 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 GALK2Q01415 458 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ECH1Q13011 328 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ELOAQ14241 798 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 NADSYN1Q6IA69 706 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 FRMPD2BQ6IN97 320 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 PAQR9Q6ZVX9 377 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 FOXJ1Q92949 421 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF649Q9BS31 505 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 MRI1Q9BV20 369 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 SYNPO2LQ9H987 977 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 HHATLQ9HCP6 504 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 DUX1O43812 170 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF888P0CJ79 500 aaPredicted RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 UBE2UQ5VVX9 321 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 PXKQ7Z7A4 578 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 BOLLQ8N9W6 283 aaKnown RBP15.51■□□□□ 0.07
COL7A1-210ENST00000487017 RHOXF1Q8NHV9 184 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 HAVCR2Q8TDQ0 301 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 COQ10AQ96MF6 247 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 SMIM14Q96QK8 99 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 LMF1Q96S06 567 aa15.51■□□□□ 0.07
COL7A1-210ENST00000487017 NTSR1P30989 418 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 PBX2P40425 430 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 MLLT11Q13015 90 aaPredicted RBP15.5■□□□□ 0.07
COL7A1-210ENST00000487017 PIP5KL1Q5T9C9 394 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 TMEM163Q8TC26 289 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 C2orf42Q9NWW7 574 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 GOLGA4Q13439 2230 aaKnown RBP15.5■□□□□ 0.07
COL7A1-210ENST00000487017 KIAA0355O15063 1070 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 DNAJB6O75190 326 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 OR1F2PQ96R84 312 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 JMJD7P0C870 316 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF35P13682 527 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 AGAP6Q5VW22 663 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 PODNL1Q6PEZ8 512 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 ALKAL1Q6UXT8 129 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 SLC7A13Q8TCU3 470 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 AGAP4Q96P64 663 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 PITX2Q99697 317 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 GPR174Q9BXC1 333 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 LINC00597Q9H2U6 94 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 DDX31Q9H8H2 851 aaKnown RBP15.5■□□□□ 0.07
COL7A1-210ENST00000487017 ARPC4-TTLL3A0A0A6YYG9 625 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 MEGF11A6BM72 1044 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 SLC10A3P09131 477 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 ITGB7P26010 798 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 TNFSF8P32971 234 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 TRA2BP62995 288 aaKnown RBP15.5■□□□□ 0.07
COL7A1-210ENST00000487017 ARHGAP19Q14CB8 494 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 MPP7Q5T2T1 576 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 FAM69AQ5T7M9 428 aa15.5■□□□□ 0.07
COL7A1-210ENST00000487017 HPGDSO60760 199 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 SYNGR4O95473 234 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 IFNA5P01569 189 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 MSL3P1P0C860 447 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 SMN1Q16637 294 aaKnown RBP15.49■□□□□ 0.07
COL7A1-210ENST00000487017 PM20D2Q8IYS1 436 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 SFXN5Q8TD22 340 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 KLHL15Q96M94 604 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 AP1S3Q96PC3 154 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 OR51J1Q9H342 316 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 USP22Q9UPT9 525 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 F5H5P2 479 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 UGT2B7P16662 529 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 ZNF542PQ5EBM4 170 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 AWAT2Q6E213 333 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 ACOT4Q8N9L9 421 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 C1QTNF2Q9BXJ5 285 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 MYH4Q9Y623 1939 aa15.49■□□□□ 0.07
COL7A1-210ENST00000487017 A0A1W2PQ09 198 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms