RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RPP38P78345 283 aaKnown RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 GSTO1P78417 241 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 FCHO2Q0JRZ9 810 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 PPIL2Q13356 520 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SPCS2Q15005 226 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 KNOP1Q1ED39 458 aaKnown RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 RGS21Q2M5E4 152 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 CCDC14Q49A88 953 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 LRRC37A5PQ49AS3 106 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SBK1Q52WX2 424 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 HERC4Q5GLZ8 1057 aaPredicted RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.76□□□□□ -1.65
USP40-213ENST00000483216 LIN9Q5TKA1 542 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SLC27A4Q6P1M0 643 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 C16orf87Q6PH81 154 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 MSANTD1Q6ZTZ1 278 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 RNF130Q86XS8 419 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 TMEM99Q8N816 258 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 C4orf32Q8N8J7 132 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 SPPL2AQ8TCT8 520 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 CD99L2Q8TCZ2 262 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 MGARPQ8TDB4 240 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 C10orf82Q8WW14 230 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 CYTH2Q99418 400 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 CITED2Q99967 270 aaPredicted RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 BCL7BQ9BQE9 202 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 OSBPL11Q9BXB4 747 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 CDC42EP4Q9H3Q1 356 aaKnown RBP4.76□□□□□ -1.65
USP40-213ENST00000483216 SLC38A10Q9HBR0 1119 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 S100A14Q9HCY8 104 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 APPL1Q9UKG1 709 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ITGA11Q9UKX5 1188 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ALG6Q9Y672 507 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 BTAF1O14981 1849 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 NHSQ6T4R5 1651 aa4.76□□□□□ -1.65
USP40-213ENST00000483216 ZSCAN5CA6NGD5 496 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 SMIM23A6NLE4 172 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SYCE1LA8MT33 242 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 LMO7DNF2Z398 122 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 TRDMT1O14717 391 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 INPP4BO15327 924 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SIGLEC5O15389 551 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 PSTPIP1O43586 416 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SRSF10O75494 262 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 SHBGP04278 402 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 HOXD4P09016 255 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 PSMC3P17980 439 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 IL4RP24394 825 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 PIK3R1P27986 724 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SERPINB6P35237 376 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 MAGEA4P43358 317 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 NPBWR1P48145 328 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SERPINB10P48595 397 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SERPINB9P50453 376 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 CLCN4P51793 760 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 NAPAP54920 295 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 C21orf59P57076 290 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 ATP6V0D1P61421 351 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 RBP5P82980 135 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 WASHC5Q12768 1159 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 MLF2Q15773 248 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 ACSBG2Q5FVE4 666 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 ARMCX4Q5H9R4 360 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SLC10A5Q5PT55 438 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 MPP7Q5T2T1 576 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 ZNF571Q7Z3V5 609 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 IQCF2Q8IXL9 164 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SIX6OS1Q8N1H7 587 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 PACRGLQ8N7B6 248 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 GDAP1Q8TB36 358 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 U2AF1L4Q8WU68 220 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 ZNF597Q96LX8 424 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 CCT7Q99832 543 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 ATG101Q9BSB4 218 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 THUMPD3Q9BV44 507 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 GCOM2Q9BZD3 368 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 GANQ9H2C0 597 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 TMEM206Q9H813 350 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 C3orf14Q9HBI5 128 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 ANKHQ9HCJ1 492 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SLC7A10Q9NS82 523 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 RHBDL2Q9NX52 303 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 SLCO1C1Q9NYB5 712 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 GCNT4Q9P109 453 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 NARFQ9UHQ1 456 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 GTF3C4Q9UKN8 822 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 FAM32AQ9Y421 112 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 COL4A1P02462 1669 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 MYH13Q9UKX3 1938 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 MAST2Q6P0Q8 1798 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 CACNA1SQ13698 1873 aa4.75□□□□□ -1.65
USP40-213ENST00000483216 COL1A1P02452 1464 aaPredicted RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 TNS1Q9HBL0 1735 aaKnown RBP4.75□□□□□ -1.65
USP40-213ENST00000483216 CLUHO75153 1309 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SF3B1O75533 1304 aaKnown RBP eCLIP4.74□□□□□ -1.65
USP40-213ENST00000483216 SBF2Q86WG5 1849 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 A0A0G2JND7 137 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SMCO2A6NFE2 343 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ARHGAP42A6NI28 874 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ARHGEF33A8MVX0 844 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms