RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DHRS7Q9Y394 339 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 GREB1LQ9C091 1923 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 LOC730098B7Z3J9 87 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 KCNQ2O43526 872 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 LDB2O43679 373 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC25A12O75746 678 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 OR8U8P0C7N1 319 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC1A3P43003 542 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 STC1P52823 247 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 RAG2P55895 527 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 OR2B8PP59922 312 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 DCDP81605 110 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF33AQ06730 810 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ACOT12Q8WYK0 555 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 NEU1Q99519 415 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF471Q9BX82 626 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 ULBP1Q9BZM6 244 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 BARX1Q9HBU1 254 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 NOX3Q9HBY0 568 aa11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 MAFBQ9Y5Q3 323 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-213ENST00000511496 STRCP1A6NGW2 1772 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM229AB2RXF0 380 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 CACNB4O00305 520 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 PRMT3O60678 531 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 KRT33AO76009 404 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 IQCF3P0C7M6 154 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ITGA3P26006 1051 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 IRS1P35568 1242 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 GJA5P36382 358 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 RPL3P39023 403 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 TAP2Q03519 686 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 KRBOX4Q5JUW0 171 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC22A10Q63ZE4 541 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ETV3LQ6ZN32 361 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 KDF1Q8NAX2 398 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OR5T3Q8NGG3 340 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 PXYLP1Q8TE99 480 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 TMPRSS13Q9BYE2 586 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 POLR2J3Q9H1A7 115 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 GFOD1Q9NXC2 390 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 METTL1Q9UBP6 276 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 TRBV4-1A0A0J9YWV2 114 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 FMO6PO60774 539 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 LATS1O95835 1130 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OR12D1P0DN82 309 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ETFAP13804 333 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ANXA11P50995 505 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 PYY3Q5JQD4 70 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 MED10Q9BTT4 135 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 DEFB129Q9H1M3 183 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 DBNDD1Q9H9R9 158 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ISYNA1Q9NPH2 558 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OR2M5A3KFT3 312 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 MOXD2PA6NHM9 499 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 KLK8O60259 260 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 GJB3O75712 270 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 AQP8O94778 261 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OSMP13725 252 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 HTR2AP28223 471 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ADH6P28332 368 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 GDNFP39905 211 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ELAVL2Q12926 359 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 VEZF1Q14119 521 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 C2orf68Q2NKX9 166 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ZC3H14Q6PJT7 736 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OR2W3Q7Z3T1 314 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 REC114Q7Z4M0 266 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 LRRTM1Q86UE6 522 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 ARHGAP12Q8IWW6 846 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 POMGNT2Q8NAT1 580 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 MYLIPQ8WY64 445 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 NT5C3BQ969T7 300 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 UBL7Q96S82 380 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 OPA3Q9H6K4 179 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 POPDC3Q9HBV1 291 aa11.32□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A087X0M5 115 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1B0GX30 115 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1W2PRB8 838 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 LRRN3E7EW58 273 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 PGRMC2O15173 223 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 DPM1O60762 260 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ADAMTS4O75173 837 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SH3BGRLO75368 114 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 GCM2O75603 506 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 USP17L7P0C7H9 530 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 COX7A2P14406 83 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 IFNGR1P15260 489 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 HOXB8P17481 243 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 HOXA6P31267 233 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ATP6V1E1P36543 226 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ALG11Q2TAA5 492 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SV2CQ496J9 727 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 MINDY4Q4G0A6 757 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 CLEC9AQ6UXN8 241 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF561Q8N587 486 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 C11orf65Q8NCR3 313 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 CCDC54Q8NEL0 328 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 NLGN2Q8NFZ4 835 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 167.9 ms