RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MRPS26Q9BYN8 205 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC25A32Q9H2D1 315 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 GPN2Q9H9Y4 310 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 PLEKHA2Q9HB19 425 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SEBOXQ9HB31 216 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 FZD3Q9NPG1 666 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 C19orf73Q9NVV2 129 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM248Q9NWD8 314 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 KLHL8Q9P2G9 620 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 UPB1Q9UBR1 384 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 DKK4Q9UBT3 224 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SMPXQ9UHP9 88 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 LEF1Q9UJU2 399 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 ICKQ9UPZ9 632 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC27A6Q9Y2P4 619 aa4.5□□□□□ -1.69
CCDC88A-209ENST00000456975 MROH6A6NGR9 719 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 E9PLN8 166 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 POC1B-GALNT4F8VUJ3 575 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 H7C2Y5 167 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CHADO15335 359 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SPRY1O43609 319 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KDELR3O43731 214 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 OR10H2O60403 315 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SNNO75324 88 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 NME6O75414 186 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CER1O95813 267 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 LCATP04180 440 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC35E2BP0CK96 405 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC35E2P0CK97 266 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 STAG3L1P0CL83 205 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC2A4P14672 509 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF25P17030 456 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 EEF1B2P24534 225 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ID1P41134 155 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FRKP42685 505 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GNPDA1P46926 289 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GPR143P51810 404 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CHN2P52757 468 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 UGT2B15P54855 530 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CDH15P55291 814 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 DUSP2Q05923 314 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KLF10Q13118 480 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 NECTIN1Q15223 517 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 BAK1Q16611 211 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 DUSP6Q16828 381 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PLEKHN1Q494U1 663 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TRIM60Q495X7 471 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 AKIRIN2Q53H80 203 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM200BQ69YZ2 307 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM88Q6PEY1 159 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GCNT7Q6ZNI0 430 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ECHDC2Q86YB7 292 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RAB43Q86YS6 212 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF444Q8N0Y2 327 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FSTL5Q8N475 847 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 STX19Q8N4C7 294 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RASGEF1AQ8N9B8 481 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 DNAJB14Q8TBM8 379 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GLYATL2Q8WU03 294 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HMGB4Q8WW32 186 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 DGAT2Q96PD7 388 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ASCL2Q99929 193 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 VKORC1Q9BQB6 163 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GGACTQ9BVM4 153 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PKIBQ9C010 78 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MAGT1Q9H0U3 335 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MED20Q9H944 212 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CPNE5Q9HCH3 593 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 IL17RBQ9NRM6 502 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 COPZ2Q9P299 210 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ANAPC7Q9UJX3 599 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PADI1Q9ULC6 663 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CNTN6Q9UQ52 1028 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RCE1Q9Y256 329 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNK6Q9Y257 313 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MYRFQ9Y2G1 1151 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNIP3Q9Y2W7 256 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HEMK1Q9Y5R4 338 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 LRRC37A2A6NM11 1700 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 NEDD4P46934 1319 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 LAMA4Q16363 1823 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A1W2PNV4 684 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CDHR4A6H8M9 788 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MGAT4DA6NG13 374 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CBY3A6NI87 242 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM90A20PA6NIJ5 464 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KLRF2D3W0D1 207 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 H3BSA7 217 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PSMD12O00232 456 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ARPC3O15145 178 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TRIM24O15164 1050 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF185O15231 689 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RGS10O43665 173 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FADS1O60427 444 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TOX4O94842 621 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SOX30O94993 753 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TDP2O95551 362 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CXCL14O95715 111 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GLP2RO95838 553 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms