RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 CEACAM1P13688 526 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 LARS2Q15031 903 aaKnown RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 DEF8Q6ZN54 512 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 TMEM179BQ7Z7N9 219 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 TMPRSS12Q86WS5 348 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 G6PC3Q9BUM1 346 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 FAM32AQ9Y421 112 aaKnown RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 ENPP4Q9Y6X5 453 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 CCDC88CQ9P219 2028 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 FRG2CA6NGY1 282 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 OR6C76A6NM76 312 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 UGT2B17O75795 530 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 DRD5P21918 477 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 PRKAR1BP31321 381 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 RRM2P31350 389 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 RPS18P62269 152 aaKnown RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 OTUD3Q5T2D3 398 aaPredicted RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 TBPL2Q6SJ96 375 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 ZNF836Q6ZNA1 936 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 HS3ST5Q8IZT8 346 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 CLIP4Q8N3C7 705 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 APCDD1LQ8NCL9 501 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 EFHD2Q96C19 240 aaPredicted RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 ZNF347Q96SE7 839 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 ZNF223Q9UK11 482 aaPredicted RBP24.8■■□□□ 1.56
MSX1-201ENST00000382723 SLC9A8Q9Y2E8 581 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 CHST2Q9Y4C5 530 aa24.8■■□□□ 1.56
MSX1-201ENST00000382723 CFAP54Q96N23 3096 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 G3V2T6 193 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 FRS3O43559 492 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 DBIP07108 87 aaKnown RBP24.79■■□□□ 1.56
MSX1-201ENST00000382723 NR0B1P51843 470 aaKnown RBP24.79■■□□□ 1.56
MSX1-201ENST00000382723 DECR1Q16698 335 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 DHRS4L2Q6PKH6 230 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 STK32CQ86UX6 486 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 ZDHHC13Q8IUH4 622 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 PRR22Q8IZ63 422 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 REEP1Q9H902 201 aa24.79■■□□□ 1.56
MSX1-201ENST00000382723 LIN28AQ9H9Z2 209 aaKnown RBP24.79■■□□□ 1.56
MSX1-201ENST00000382723 SAMHD1Q9Y3Z3 626 aaKnown RBP24.79■■□□□ 1.56
MSX1-201ENST00000382723 RPS4Y1P22090 263 aaKnown RBP24.78■■□□□ 1.56
MSX1-201ENST00000382723 DCAF7P61962 342 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 FOXD4Q12950 439 aaPredicted RBP24.78■■□□□ 1.56
MSX1-201ENST00000382723 GANABQ14697 944 aaKnown RBP24.78■■□□□ 1.56
MSX1-201ENST00000382723 PPP4R4Q6NUP7 873 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 ZNF614Q8N883 585 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 SEMA4CQ9C0C4 833 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 C15orf41Q9Y2V0 281 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 RIF1Q5UIP0 2472 aaKnown RBP24.78■■□□□ 1.56
MSX1-201ENST00000382723 DMXL1Q9Y485 3027 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 EI24O14681 340 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 DCTP40126 519 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 RNF4P78317 190 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 SPIBQ01892 262 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 LAPTM4AQ15012 233 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 LIN52Q52LA3 116 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 HSDL2Q6YN16 418 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 ESX1Q8N693 406 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 OR6T1Q8NGN1 323 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 OR5K1Q8NHB7 308 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 SDCCAG3Q96C92 435 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 PIP5K1AQ99755 562 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 KLHL28Q9NXS3 571 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 RHCGQ9UBD6 479 aa24.78■■□□□ 1.56
MSX1-201ENST00000382723 SYT5O00445 386 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 RASAL1O95294 804 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 THBS1P07996 1170 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 CD63P08962 238 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 SLC26A5P58743 744 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 GABREP78334 506 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 PDZK1Q5T2W1 519 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 THAP3Q8WTV1 239 aaPredicted RBP24.77■■□□□ 1.56
MSX1-201ENST00000382723 PMM1Q92871 262 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 VMP1Q96GC9 406 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 CNOT11Q9UKZ1 510 aaKnown RBP24.77■■□□□ 1.56
MSX1-201ENST00000382723 TCFL5Q9UL49 500 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 PPIEQ9UNP9 301 aaKnown RBP24.77■■□□□ 1.56
MSX1-201ENST00000382723 LRRC42Q9Y546 428 aa24.77■■□□□ 1.56
MSX1-201ENST00000382723 LOC102723996A0A087X1L8 192 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 TRBV11-1A0A0K0K1C0 115 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 DNAJB5O75953 348 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 RHCEP18577 417 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 EEF1A1P68104 462 aaKnown RBP24.76■■□□□ 1.55
MSX1-201ENST00000382723 PCOLCEQ15113 449 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 SVOPLQ8N434 492 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 OR52J3Q8NH60 311 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 FARSAQ9Y285 508 aaKnown RBP24.76■■□□□ 1.55
MSX1-201ENST00000382723 HS3ST3B1Q9Y662 390 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 ADAMDEC1O15204 470 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 RAB40ALP0C0E4 278 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 NID1P14543 1247 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 PRKACGP22612 351 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 DNAJA1P31689 397 aaKnown RBP24.76■■□□□ 1.55
MSX1-201ENST00000382723 CDH12P55289 794 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 TAF11Q15544 211 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 TCTN3Q6NUS6 607 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 NLGN4XQ8N0W4 816 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 CACTIN-AS1Q8N1I8 211 aa24.76■■□□□ 1.55
MSX1-201ENST00000382723 NLGN4YQ8NFZ3 816 aaPredicted RBP24.76■■□□□ 1.55
MSX1-201ENST00000382723 MAGEE2Q8TD90 523 aaPredicted RBP24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms