RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SLC44A3Q8N4M1 653 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 ZNF461Q8TAF7 563 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 BTBD2Q9BX70 525 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 DPH1Q9BZG8 443 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 CDH10Q9Y6N8 788 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 ARID2Q68CP9 1835 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 COL4A5P29400 1685 aa10.4□□□□□ -0.75
CLN3-244ENST00000636147 A0A0G2JPF8 293 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 ZC3H12DA2A288 527 aaKnown RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 SLC9B1P1A6NJY1 282 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 LEUTXA8MZ59 168 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 HNRNPCL3B7ZW38 293 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 UGDHO60701 494 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 HMGN2P05204 90 aaKnown RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 HNRNPCL4P0DMR1 293 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 ADH7P40394 386 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CLCNKAP51800 687 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 TP53I3Q53FA7 332 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 ACSM3Q53FZ2 586 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 OLFML2AQ68BL7 652 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 TEX261Q6UWH6 196 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 GJD3Q8N144 294 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 LSMEM1Q8N8F7 131 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 OR5W2Q8NH69 310 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CXorf40BQ96DE9 158 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PKMYT1Q99640 499 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 FTSJ1Q9UET6 329 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PLEKHB1Q9UF11 243 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 PRKAG2Q9UGJ0 569 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 WDR45Q9Y484 360 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 U3KQ87 197 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 A0A0B4J203 849 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 A0A1B0GVI7 797 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 GTPBP1O00178 669 aaKnown RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 LGALS8O00214 317 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PRAMEF4O60810 478 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 UBXN7O94888 489 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SLC6A12P48065 614 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PER3P56645 1201 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CLDN12P56749 244 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 OR10A3P58181 314 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 OR12D2P58182 307 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 MGAT3Q09327 533 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PRAMEF9Q5VWM5 478 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 AMZ2Q86W34 360 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CHTF18Q8WVB6 975 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 TBC1D20Q96BZ9 403 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 ARSGQ96EG1 525 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CLSTN3Q9BQT9 956 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 AIFM2Q9BRQ8 373 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SYT17Q9BSW7 474 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SLC39A1Q9NY26 324 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 MBD1Q9UIS9 605 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 GMFGO60234 142 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CREBL2O60519 120 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 ECDO95905 644 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 PIPP12273 146 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 VEGFCP49767 419 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 LSM11P83369 360 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLN3-244ENST00000636147 TCTE1Q5JU00 501 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SLCO4C1Q6ZQN7 724 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 FAM220AQ7Z4H9 259 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 RANBP3LQ86VV4 465 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 TMEM173Q86WV6 379 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 HCAR2Q8TDS4 363 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SMAP2Q8WU79 429 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 NKD1Q969G9 470 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SFXN2Q96NB2 322 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 OR2M2Q96R28 347 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 SLC25A18Q9H1K4 315 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 BABAM2Q9NXR7 383 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 FBXL3Q9UKT7 428 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 CLEC4EQ9ULY5 219 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 PIKFYVEQ9Y2I7 2098 aa10.39□□□□□ -0.75
CLN3-244ENST00000636147 COL11A1P12107 1806 aaPredicted RBP10.39□□□□□ -0.75
CLN3-244ENST00000636147 RBBP6Q7Z6E9 1792 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 ANXA2P2A6NMY6 339 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PDCD5O14737 125 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 CCL16O15467 120 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PRKRAO75569 313 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 RGS11O94810 467 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PCCBP05166 539 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 S100A6P06703 90 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ANXA2P07355 339 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 HPGDP15428 266 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 CPEP16870 476 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ACVR2AP27037 513 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 MPIP34949 423 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 STXBP1P61764 594 aaKnown RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 ARHGAP15Q53QZ3 475 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TOR1AIP1Q5JTV8 583 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 TIGD3Q6B0B8 471 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 METAP1DQ6UB28 335 aaPredicted RBP10.38□□□□□ -0.75
CLN3-244ENST00000636147 VRK2Q86Y07 508 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 NPAS4Q8IUM7 802 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 PDZD9Q8IXQ8 264 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 FANK1Q8TC84 345 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 CXorf40AQ8TE69 158 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 ST8SIA4Q92187 359 aa10.38□□□□□ -0.75
CLN3-244ENST00000636147 GCDHQ92947 438 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms