RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ERVK-19Q9WJR5 959 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.68□□□□□ -1.82
VPS29-202ENST00000447578 COLEC10Q9Y6Z7 277 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 RBBP6Q7Z6E9 1792 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 WDR81Q562E7 1941 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PTPRJQ12913 1337 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 MROH7Q68CQ1 1323 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 ARID2Q68CP9 1835 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 A0A087WUV0 522 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 IGLV9-49A0A0B4J1Y8 123 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 GSTTP1A0A1W2PQM5 241 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 A0A1W2PS18 150 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 GMNCA6NCL1 334 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 C2CD4DB7Z1M9 353 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 EEF2KO00418 725 aaKnown RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 CHUKO15111 745 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 SLC22A2O15244 555 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 OGTO15294 1046 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 RGS16O15492 202 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 CLDN3O15551 220 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 SYT7O43581 403 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 KIAA0754O94854 1291 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 EPOP01588 193 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 PIGRP01833 764 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CLTAP09496 248 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 EZRP15311 586 aaKnown RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 FUT1P19526 365 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 PRDX6P30041 224 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 PKLRP30613 574 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 SLC1A1P43005 524 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 MAGEA9P43362 315 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 IFNAR2P48551 515 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 NR2C2P49116 596 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 FNTAP49354 379 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CLCN4P51793 760 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ZNF132P52740 706 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CRIP2P52943 208 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 NOP14P78316 857 aaKnown RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 CALCOCO2Q13137 446 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 SIX1Q15475 284 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 TRIP13Q15645 432 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 CMPK2Q5EBM0 449 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 LDLRAP1Q5SW96 308 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CES4AQ5XG92 561 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 UGT3A1Q6NUS8 523 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 DHRS11Q6UWP2 260 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 C9orf139Q6ZV77 190 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 TUBA1AQ71U36 451 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ZNF677Q86XU0 584 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CCDC50Q8IVM0 306 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 DCUN1D3Q8IWE4 304 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 MCOLN2Q8IZK6 566 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 METTL27Q8N6F8 245 aaPredicted RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 OTUD6BQ8N6M0 293 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 DENND6BQ8NEG7 585 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 TRPV3Q8NET8 790 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 OR5B17Q8NGF7 314 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 FBXO25Q8TCJ0 367 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 MAIP1Q8WWC4 291 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 RAPGEF5Q92565 580 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 FCGR1BQ92637 280 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ART4Q93070 314 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 C4orf45Q96LM5 186 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 CCT8L2Q96SF2 557 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 TUBA1CQ9BQE3 449 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 C11orf70Q9BRQ4 267 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 TCHPQ9BT92 498 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 SHARPINQ9H0F6 387 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 DPEP3Q9H4B8 488 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 RIBC2Q9H4K1 309 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 DHX33Q9H6R0 707 aaKnown RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 LRRC19Q9H756 370 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ECT2Q9H8V3 914 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ADAM22Q9P0K1 906 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ASIC3Q9UHC3 531 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 XPO7Q9UIA9 1087 aaKnown RBP3.67□□□□□ -1.82
VPS29-202ENST00000447578 DUSP12Q9UNI6 340 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 STYXL1Q9Y6J8 313 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 ATAD5Q96QE3 1844 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 KIF13BQ9NQT8 1826 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 UMODL1Q5DID0 1318 aa3.67□□□□□ -1.82
VPS29-202ENST00000447578 PSME4Q14997 1843 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 IGKV6D-21A0A0A0MT36 114 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TRBV5-5A0A0J9YX44 114 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 A0A0U1RRA0 63 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TRIM64CA6NLI5 447 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 F8WDY8 70 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ATP6V0E1O15342 81 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 RIPK2O43353 540 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 PSTPIP1O43586 416 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 TRAPPC3O43617 180 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 PROSCO94903 275 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 CPNE6O95741 557 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 FAM107AO95990 144 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 MT-ND2P03891 347 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ATP1B1P05026 303 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 EDN1P05305 212 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 PROS1P07225 676 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 RALAP11233 206 aa3.66□□□□□ -1.82
VPS29-202ENST00000447578 ODC1P11926 461 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms