RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 LARP4Q71RC2 724 aaKnown RBP eCLIP7.08□□□□□ -1.28
CD44-211ENST00000442151 TRIM42Q8IWZ5 723 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 ZZZ3Q8IYH5 903 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PRR22Q8IZ63 422 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 RPRMLQ8N4K4 120 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 NATD1Q8N6N6 113 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 ZFP28Q8NHY6 868 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 UHMK1Q8TAS1 419 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 EXOSC8Q96B26 276 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 TRIM44Q96DX7 344 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 ZNF681Q96N22 645 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 DACH2Q96NX9 599 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 SLC39A3Q9BRY0 314 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 YIPF4Q9BSR8 244 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 EPB41L4BQ9H329 900 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 Q9N2J8 555 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 MID1IP1Q9NPA3 183 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 FARSBQ9NSD9 589 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 TAS2R7Q9NYW3 318 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 TMEM216Q9P0N5 145 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 EIF3LQ9Y262 564 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 PLLPQ9Y342 182 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 SLC6A5Q9Y345 797 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PCNX1Q96RV3 2341 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 UQCRHLA0A096LP55 91 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 A6NNC1 897 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PLOD2O00469 737 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 RGS14O43566 566 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 DLX3O60479 287 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 KCNH1O95259 989 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 HSPA4LO95757 839 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CBX7O95931 251 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 IL3P08700 152 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 UROSP10746 265 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CD99P14209 185 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PCSK2P16519 638 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 POU3F2P20265 443 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 LCN1P31025 176 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 DNAJA1P31689 397 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 RPL3P39023 403 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 CPA2P48052 419 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 HMGCS1Q01581 520 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 BTKQ06187 659 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 ZNF763Q0D2J5 394 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 EXOSC7Q15024 291 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 CEBPEQ15744 281 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 TRMT12Q53H54 448 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 EIPR1Q53HC9 387 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 ZNF628Q5EBL2 1059 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 ZYG11AQ6WRX3 759 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 YRDCQ86U90 279 aaKnown RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 LIX1LQ8IVB5 337 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 SLC44A2Q8IWA5 706 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 C17orf53Q8N3J3 647 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 CCNYL1Q8N7R7 359 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CCDC63Q8NA47 563 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 TNIP2Q8NFZ5 429 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 TMBIM1Q969X1 311 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CNRIP1Q96F85 164 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 SFXN2Q96NB2 322 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 TRMOQ9BU70 441 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CLEC4MQ9H2X3 399 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 FOLH1BQ9HBA9 442 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PAQR5Q9NXK6 330 aaPredicted RBP7.08□□□□□ -1.28
CD44-211ENST00000442151 PPP4R1LQ9P1A2 415 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 MAPRE3Q9UPY8 281 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 WIF1Q9Y5W5 379 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 PKDREJQ9NTG1 2253 aa7.08□□□□□ -1.28
CD44-211ENST00000442151 CACNA1CQ13936 2221 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 HCFC1P51610 2035 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 MYO1GB0I1T2 1018 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 EEF1E1-BLOC1S5C9J1V9 151 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 EEF1E1O43324 174 aaKnown RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 TSPAN2O60636 221 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 UGT2B11O75310 529 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 RSL1D1O76021 490 aaKnown RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 LRATO95237 230 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 NEFHP12036 1026 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 FOSL1P15407 271 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 TSPAN8P19075 237 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 DPP4P27487 766 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 CRHR1P34998 444 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 NCBP2P52298 156 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-211ENST00000442151 NAGLUP54802 743 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 DLX5P56178 289 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 KRTAP10-9P60411 292 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 C17orf67Q0P5P2 114 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 PDSS1Q5T2R2 415 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 GTF2IRD2BQ6EKJ0 949 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 ZCCHC12Q6PEW1 402 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 GTF2IRD2Q86UP8 949 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 GRAMD2AQ8IUY3 354 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 NOA1Q8NC60 698 aaKnown RBP7.07□□□□□ -1.28
CD44-211ENST00000442151 ARL8AQ96BM9 186 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 MBD6Q96DN6 1003 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 NODALQ96S42 347 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 ADOQ96SZ5 270 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 SH3GL2Q99962 352 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 PIGQQ9BRB3 760 aa7.07□□□□□ -1.28
CD44-211ENST00000442151 RBM24Q9BX46 236 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms