RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LRATO95237 230 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 IGHG3P01860 377 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 TPOP07202 933 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 BGNP21810 368 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 IL12BP29460 328 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 MC3RP41968 323 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 CASP3P42574 277 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 MAGEA5P43359 124 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 MASP1P48740 699 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 MAN2A2P49641 1150 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 SMSP52788 366 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 PNLIPRP2P54317 469 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 HSF1Q00613 529 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 ZNF155Q12901 538 aaPredicted RBP12.29□□□□□ -0.44
CLK3-216ENST00000564468 AGBL2Q5U5Z8 902 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 IL23RQ5VWK5 629 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 ATG16L1Q676U5 607 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 SLC30A6Q6NXT4 461 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 OR2L13Q8N349 312 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 LIX1Q8N485 282 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 ZNF781Q8N8C0 355 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 SIMC1Q8NDZ2 872 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 CLHC1Q8NHS4 586 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 RAB3IL1Q8TBN0 382 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 TLCD1Q96CP7 247 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 C3orf30Q96M34 536 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 JSRP1Q96MG2 331 aaPredicted RBP12.29□□□□□ -0.44
CLK3-216ENST00000564468 RILPQ96NA2 401 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 COL21A1Q96P44 957 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 PHF12Q96QT6 1004 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 EXO5Q9H790 373 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 C3orf14Q9HBI5 128 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 PROK2Q9HC23 129 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 ATP6V1HQ9UI12 483 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 HAO1Q9UJM8 370 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 TINAGQ9UJW2 476 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 OR10H1Q9Y4A9 318 aa12.29□□□□□ -0.44
CLK3-216ENST00000564468 A0A1B0GVC2 190 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 E9PLN8 166 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 UPK1AO00322 258 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 AQP7O14520 342 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 BCKDKO14874 412 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 SCAMP2O15127 329 aaKnown RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 ZG16O60844 167 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TRIM3O75382 744 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 CT45A8P0DMV1 189 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 CT45A9P0DMV2 189 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 PRPS1L1P21108 318 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 FRKP42685 505 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 PSMD4P55036 377 aaKnown RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 EMX2Q04743 252 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 HSPB3Q12988 150 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 MLC1Q15049 377 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 PDCD2Q16342 344 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 PRSS53Q2L4Q9 553 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 VPS26BQ4G0F5 336 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 CYP27C1Q4G0S4 372 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 CT45A2Q5DJT8 189 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TMEM211Q6ICI0 200 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 XKRXQ6PP77 449 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TRILQ7L0X0 811 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 ZNF551Q7Z340 670 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 DOLPP1Q86YN1 238 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 SLC44A2Q8IWA5 706 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 CHERPQ8IWX8 916 aaKnown RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 LRRC34Q8IZ02 419 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 ZNF808Q8N4W9 903 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 PHF10Q8WUB8 498 aaKnown RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 HGDQ93099 445 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TMBIM1Q969X1 311 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 SARAFQ96BY9 339 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 ZBTB9Q96C00 473 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 SLC35A4Q96G79 324 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TMEM41AQ96HV5 264 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 VKORC1Q9BQB6 163 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TP63Q9H3D4 680 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 ZNF703Q9H7S9 590 aaPredicted RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 ANKRA2Q9H9E1 313 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 Q9N2J8 555 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 ACKR4Q9NPB9 350 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 THAP1Q9NVV9 213 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 NOP53Q9NZM5 478 aaKnown RBP12.28□□□□□ -0.44
CLK3-216ENST00000564468 KLRF1Q9NZS2 232 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 MEMO1Q9Y316 297 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 POLQO75417 2590 aa12.28□□□□□ -0.44
CLK3-216ENST00000564468 TRGV5A0A0B4J1U4 118 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 UGT2B11O75310 529 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 RNF224P0DH78 156 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 AGAP20933 346 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 GDF1P27539 372 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 COL8A1P27658 744 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 RIPPLY3P57055 190 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 WDR4P57081 412 aaKnown RBP12.27□□□□□ -0.45
CLK3-216ENST00000564468 PRR5P85299 388 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 BST1Q10588 318 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 DECR1Q16698 335 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 LSM12Q3MHD2 195 aaKnown RBP12.27□□□□□ -0.45
CLK3-216ENST00000564468 CPTPQ5TA50 214 aa12.27□□□□□ -0.45
CLK3-216ENST00000564468 CES4AQ5XG92 561 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms