RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 STX6O43752 255 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 DKC1O60832 514 aaKnown RBP eCLIP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 WISP3O95389 354 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 APOA4P06727 396 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 FAM58BPP0C7Q3 252 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 UGT1A6P19224 532 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ZP3P21754 424 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 PAX7P23759 505 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 OR3A4PP47883 348 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CCNHP51946 323 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 IFFO1Q0D2I5 559 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ORC2Q13416 577 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 TMED1Q13445 227 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC14Q49A88 953 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 HSP90B2PQ58FF3 399 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 C16orf54Q6UWD8 224 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CWC27Q6UX04 472 aaKnown RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 TFAP2EQ6VUC0 442 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 Q6ZRG5 221 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 Q7L0L9 218 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 LUZP1Q86V48 1076 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 IQCA1Q86XH1 822 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ITPRIPQ8IWB1 547 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC170Q8IYT3 715 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CADM2Q8N3J6 435 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF433Q8N7K0 673 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 OR8K1Q8NGG5 319 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 N4BP2L2Q92802 583 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 FER1L6-AS2Q96M78 137 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 BPIFA3Q9BQP9 254 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 JPH2Q9BR39 696 aaPredicted RBP2.61□□□□□ -1.99
VPS13C-208ENST00000559119 LRRC2Q9BYS8 371 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF175Q9Y473 711 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CHD4Q14839 1912 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 LRRIQ1Q96JM4 1722 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 TTC21AQ8NDW8 1320 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ADGRB2O60241 1585 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 PTCH1Q13635 1447 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 FANCAO15360 1455 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 FANCD2Q9BXW9 1451 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 IGKV2D-24A0A075B6R9 120 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 ERICH2A1L162 156 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 KBTBD13C9JR72 458 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 G3V3Y1 287 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 GOLGA6L19H0YKK7 550 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 P4HA2O15460 535 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC166P0CW27 439 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 SYT1P21579 422 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 IDSP22304 550 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 PTAFRP25105 342 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 MSLNQ13421 630 aaPredicted RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 P2RY14Q15391 338 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 MS4A13Q5J8X5 152 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 TTC19Q6DKK2 380 aaPredicted RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 MOB2Q70IA6 237 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 MOB1BQ7L9L4 216 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 UNC5CLQ8IV45 518 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 GPR65Q8IYL9 337 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 CNNM3Q8NE01 707 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 P3H4Q92791 437 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 IL22RA2Q969J5 263 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 DTNBP1Q96EV8 351 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 CNDP2Q96KP4 475 aaKnown RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 SPATA17Q96L03 361 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 C9orf85Q96MD7 179 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 CRACR2AQ9BSW2 395 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 CARD6Q9BX69 1037 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 TXLNGYQ9BZA5 131 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 TRIM9Q9C026 710 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 LSG1Q9H089 658 aaKnown RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 NAT10Q9H0A0 1025 aaKnown RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 ALDH8A1Q9H2A2 487 aaPredicted RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 NANOGQ9H9S0 305 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 PFDN4Q9NQP4 134 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 MRPL17Q9NRX2 175 aaKnown RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 VPS18Q9P253 973 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 NFKBIL1Q9UBC1 381 aaPredicted RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 BLOC1S6Q9UL45 172 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 ABCC4O15439 1325 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 RPGRIP1LQ68CZ1 1315 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 NESP48681 1621 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 RNF17Q9BXT8 1623 aaKnown RBP2.6□□□□□ -1.99
VPS13C-208ENST00000559119 NUP155O75694 1391 aa2.6□□□□□ -1.99
VPS13C-208ENST00000559119 TRAPPC8Q9Y2L5 1435 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 A2MP01023 1474 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF518AQ6AHZ1 1483 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 CDK13Q14004 1512 aaKnown RBP2.59□□□□□ -1.99
VPS13C-208ENST00000559119 IGKV2-28A0A075B6P5 120 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 HTR3EA5X5Y0 456 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 EIF3HO15372 352 aaKnown RBP eCLIP2.59□□□□□ -1.99
VPS13C-208ENST00000559119 MGRN1O60291 552 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 SELENOFO60613 162 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 KIAA0754O94854 1291 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 SLC2A10O95528 541 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 IGKV2D-28P01615 120 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 EPB41P11171 864 aaKnown RBP2.59□□□□□ -1.99
VPS13C-208ENST00000559119 FERP16591 822 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 GCKP35557 465 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 COPB2P35606 906 aa2.59□□□□□ -1.99
VPS13C-208ENST00000559119 NPY4RP50391 375 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms