RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SCO2O43819 266 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 HMGN2P05204 90 aaKnown RBP10.62□□□□□ -0.71
USP4-205ENST00000431357 CLEC2LP0C7M8 214 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 ACRP10323 421 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 P2RY2P41231 377 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 STAT5AP42229 794 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 CLCNKAP51800 687 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 PRKAG1P54619 331 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 GNG2P59768 71 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 PRR5P85299 388 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 ZNF234Q14588 700 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 TAB1Q15750 504 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 TBRG1Q3YBR2 411 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 FLYWCH1Q4VC44 716 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 PYDC2Q56P42 97 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 LCN1P1Q5VSP4 162 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 RRM2BQ7LG56 351 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 PIGXQ8TBF5 258 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 GATAD2BQ8WXI9 593 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 ING5Q8WYH8 240 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 TM9SF4Q92544 642 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 SLC9A6Q92581 669 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 OSTF1Q92882 214 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 UCN3Q969E3 161 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 TMEM203Q969S6 136 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 CHFRQ96EP1 664 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 FRMD6Q96NE9 622 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 LRRC3BQ96PB8 259 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 DEPDC7Q96QD5 511 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 C17orf62Q9BQA9 187 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 INSL6Q9Y581 213 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 PLXND1Q9Y4D7 1925 aa10.62□□□□□ -0.71
USP4-205ENST00000431357 AP3D1O14617 1153 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TSPAN9O75954 239 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 PCCBP05166 539 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 POU2F2P09086 479 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 CSNK2A2P19784 350 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 CFL1P23528 166 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 HLA-DMAP28067 261 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 MLLT3P42568 568 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 TSFMP43897 325 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 SLC6A11P48066 632 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TGM4P49221 684 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 RAB28P51157 221 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 DAB2P98082 770 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ACSM1Q08AH1 577 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 FUT5Q11128 374 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 SLAMF1Q13291 335 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 DSG2Q14126 1118 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 LASP1Q14847 261 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 CDK10Q15131 360 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 GPR19Q15760 415 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ZNF311Q5JNZ3 666 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 OR2G6Q5TZ20 316 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 MRM1Q6IN84 353 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 ZNF793Q6ZN11 406 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 PRICKLE2Q7Z3G6 844 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 GATAD2AQ86YP4 633 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ASCC1Q8N9N2 400 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 LINC01555Q8NAE3 123 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 SRFBP1Q8NEF9 429 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 SLC7A6Q92536 515 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 SUSD6Q92537 303 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 PLA2G12AQ9BZM1 189 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 C11orf54Q9H0W9 315 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 EGLN3Q9H6Z9 239 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 RNF121Q9H920 327 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 GIMAP4Q9NUV9 329 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 KLHL28Q9NXS3 571 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ASB4Q9Y574 426 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 A0A0G2JN53 185 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 B4DXG7 233 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TRIM3O75382 744 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 ERAL1O75616 437 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 HLA-DQB1P01920 261 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 HLA-DPB1P04440 258 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 YES1P07947 543 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 LIMS3P0CW19 117 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 LIMS4P0CW20 117 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 POLR2CP19387 275 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 HIST1H1TP22492 207 aaPredicted RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 MYL9P24844 172 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TEAD1P28347 426 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ABATP80404 500 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 QPRTQ15274 297 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TYW3Q6IPR3 259 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 MZT2AQ6P582 158 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 POGLUT1Q8NBL1 392 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 OR2A1Q8NGT9 310 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 OR2L8Q8NGY9 312 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ENKURQ8TC29 256 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 POF1BQ8WVV4 589 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TRIM63Q969Q1 353 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ZC3HAV1LQ96H79 300 aaKnown RBP10.61□□□□□ -0.71
USP4-205ENST00000431357 NOTCH4Q99466 2003 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 TEX101Q9BY14 249 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 BTBD1Q9H0C5 482 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 MMP28Q9H239 520 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 KCNN3Q9UGI6 736 aa10.61□□□□□ -0.71
USP4-205ENST00000431357 ATPIF1Q9UII2 106 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms