RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 DPM1O60762 260 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 FCGR3BO75015 233 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 MOCS3O95396 460 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 STSP08842 583 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 LBPP18428 481 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 RPL9P32969 192 aaKnown RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 RGS7P49802 495 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ALDH3A2P51648 485 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 IRX1P78414 480 aaPredicted RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 CX3CL1P78423 397 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 DEFA6Q01524 100 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 MBTD1Q05BQ5 628 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 DMPKQ09013 629 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ZNF415Q09FC8 603 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 TNK1Q13470 666 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SMU1Q2TAY7 513 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 LRRC73Q5JTD7 316 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ELFN2Q5R3F8 820 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 C16orf47Q6ZP98 133 aaPredicted RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 STXBP4Q6ZWJ1 553 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 CDR2LQ86X02 465 aaPredicted RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 CFAP206Q8IYR0 622 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 THAP8Q8NA92 274 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 PPFIBP2Q8ND30 876 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 OR7G3Q8NG95 312 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 OR2T3Q8NH03 318 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 STARD8Q92502 1023 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ESR2Q92731 530 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 RIT1Q92963 219 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 OTUB2Q96DC9 234 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SERAC1Q96JX3 654 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SGK494Q96LW2 274 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 CCDC3Q9BQI4 270 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 CACNG6Q9BXT2 260 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SLC2A11Q9BYW1 496 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 TRIM9Q9C026 710 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SYNDIG1Q9H7V2 258 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 Q9H8V8 135 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 PSTPIP2Q9H939 334 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 IL1RAPL2Q9NP60 686 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SLC38A7Q9NVC3 462 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 MAD2L2Q9UI95 211 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ACAD8Q9UKU7 415 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 WDR83OSQ9Y284 106 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 SMAD5-AS1Q9Y6J3 95 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 ZNF638Q14966 1978 aaKnown RBP3.37□□□□□ -1.87
CD44-235ENST00000532339 HERC2O95714 4834 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 UBR4Q5T4S7 5183 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 NUMA1Q14980 2115 aa3.37□□□□□ -1.87
CD44-235ENST00000532339 MYH9P35579 1960 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 FAM47DPA6NHR8 397 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 C10orf142B7Z368 130 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 C19orf84I3L1E1 186 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 SLC33A1O00400 549 aaPredicted RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 CASC3O15234 703 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 B4GALT5O43286 388 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 CYTH3O43739 400 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RNASEH1O60930 286 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 ATP6AP2O75787 350 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 PGLSO95336 258 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 GSRP00390 522 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 NR3C1P04150 777 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RLN1P04808 185 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 SPP1P10451 314 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 PSMB4P28070 264 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 MFAP3P55082 362 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ADARP55265 1226 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 MTCP1P56278 107 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 GSDMDP57764 484 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 UBXN1Q04323 297 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 SMARCB1Q12824 385 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ITGA9Q13797 1035 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 VEZF1Q14119 521 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RCN2Q14257 317 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ZNF235Q14590 738 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 LASP1Q14847 261 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 MORF4L2Q15014 288 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 TAZQ16635 292 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 CTU2Q2VPK5 515 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 UGT3A2Q3SY77 523 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 TTC31Q49AM3 519 aaPredicted RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 MCMDC2Q4G0Z9 681 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 PHLDA2Q53GA4 152 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 LCE3CQ5T5A8 94 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ATP1A1-AS1Q5TC04 95 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ARMCX5Q6P1M9 558 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 XKRXQ6PP77 449 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RAPH1Q70E73 1250 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ANO5Q75V66 913 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 C10orf53Q8N6V4 93 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 SPC24Q8NBT2 197 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ACBD4Q8NC06 268 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 MGARPQ8TDB4 240 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 C2orf15Q8WU43 125 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 CCDC107Q8WV48 283 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 IRGQQ8WZA9 623 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 NRGNQ92686 78 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 KRT35Q92764 455 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 SNX21Q969T3 373 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 CABS1Q96KC9 395 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms