RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MRPL37Q9BZE1 423 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 LHX5Q9H2C1 402 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 AZI2Q9H6S1 392 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 GPN1Q9HCN4 374 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 TUFT1Q9NNX1 390 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 FAIMQ9NVQ4 179 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 ARMC1Q9NVT9 282 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 TAS2R3Q9NYW6 316 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 DBF4Q9UBU7 674 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 IL19Q9UHD0 177 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 STX8Q9UNK0 236 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 AP3M1Q9Y2T2 418 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 PPIL1Q9Y3C6 166 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 L3MBTL1Q9Y468 752 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 PTPRKQ15262 1439 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 RRBP1Q9P2E9 1410 aaKnown RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 DIP2CQ9Y2E4 1556 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 CEP170BQ9Y4F5 1589 aaPredicted RBP3.15□□□□□ -1.91
CD44-217ENST00000525348 UBN2Q6ZU65 1347 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 SHANK2Q9UPX8 1470 aa3.15□□□□□ -1.91
CD44-217ENST00000525348 XIRP1Q702N8 1843 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 ITSN2Q9NZM3 1697 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CPS1P31327 1500 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CCNB3Q8WWL7 1395 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PHLPP1O60346 1717 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 NEURL4Q96JN8 1562 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 FHOD3Q2V2M9 1422 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 KIF27Q86VH2 1401 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 TRAPPC8Q9Y2L5 1435 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GOLGA8QA0A0J9YX86 632 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 TTC26A0AVF1 554 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GOLGA8OA6NCC3 632 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 TMEM114B3SHH9 223 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 HSBP1L1C9JCN9 74 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GOLGA8NF8WBI6 632 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 H3BQF6 201 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 DDX39AO00148 427 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 GATCO43716 136 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 ATP5HO75947 161 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 SNAPINO95295 136 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 IFNB1P01574 187 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 FGF4P08620 206 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 KRTAP1-4P0C5Y4 121 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PTBP1P26599 531 aaKnown RBP eCLIP3.14□□□□□ -1.91
CD44-217ENST00000525348 SFTPDP35247 375 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 HSD17B3P37058 310 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CASP9P55211 416 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ASIC1P78348 528 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CACNG1Q06432 222 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 TFCP2Q12800 502 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 DNAJC3Q13217 504 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 XRCC4Q13426 336 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 RIPK1Q13546 671 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ZNF146Q15072 292 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 WHAMMP3Q1A5X7 153 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 RGS21Q2M5E4 152 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 MS4A18Q3C1V0 323 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 SLC39A12Q504Y0 691 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ATP1A1-AS1Q5TC04 95 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CAVIN1Q6NZI2 390 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 DEGS2Q6QHC5 323 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 C4orf22Q6V702 233 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 MACC1Q6ZN28 852 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PIWIL3Q7Z3Z3 882 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 SLC25A42Q86VD7 318 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PSTKQ8IV42 348 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 UNC5CLQ8IV45 518 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PHC2Q8IXK0 858 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ST13P4Q8IZP2 240 aaPredicted RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 LIX1Q8N485 282 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 URGCPQ8TCY9 931 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 ASZ1Q8WWH4 475 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 P2RX5Q93086 422 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 NXPE2Q96DL1 559 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CNOT6LQ96LI5 555 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 VPS35Q96QK1 796 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PLIN2Q99541 437 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CCDC77Q9BR77 488 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CHCHD5Q9BSY4 110 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CCDC28BQ9BUN5 200 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 EDEM2Q9BV94 578 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 KATNB1Q9BVA0 655 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 NFKBIZQ9BYH8 718 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CRNKL1Q9BZJ0 848 aaKnown RBP3.14□□□□□ -1.91
CD44-217ENST00000525348 KCNK13Q9HB14 408 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 AGPAT3Q9NRZ7 376 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 NUDT15Q9NV35 164 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GPR83Q9NYM4 423 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 NLGN3Q9NZ94 848 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ACTR3BQ9P1U1 418 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 IL36AQ9UHA7 158 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GGA2Q9UJY4 613 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 FBXL4Q9UKA2 621 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 GMEB2Q9UKD1 530 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 ANGPTL2Q9UKU9 493 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 PYCARDQ9ULZ3 195 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 CHMP2BQ9UQN3 213 aa3.14□□□□□ -1.91
CD44-217ENST00000525348 RAPGEF6Q8TEU7 1601 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms