RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	ZNF548	Q8NEK5	533 aa	Predicted RBP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PROKR2	Q8NFJ6	384 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR6J1	Q8NGC5	347 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR5M9	Q8NGP3	310 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR56B4	Q8NH76	319 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	SPATA22	Q8NHS9	363 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PPTC7	Q8NI37	304 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	4.45	□□□□□ -1.7	1e-15	■■□□□ 12.9
PTCD3-212	ENST00000477520	PHOSPHO2	Q8TCD6	241 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	TWIST2	Q8WVJ9	160 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ASZ1	Q8WWH4	475 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	GGH	Q92820	318 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	FUBP1	Q96AE4	644 aa	Known RBP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ARMC5	Q96C12	935 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PYCR2	Q96C36	320 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ULK4	Q96C45	1275 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PHYHIPL	Q96FC7	376 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	SENP8	Q96LD8	212 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	KCTD7	Q96MP8	289 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	SPATA33	Q96N06	139 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ZNF583	Q96ND8	569 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	CSPG4P5	Q96PW8	444 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	MAPKAP1	Q9BPZ7	522 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	EDEM2	Q9BV94	578 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	BEX2	Q9BXY8	128 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	NFKBIZ	Q9BYH8	718 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR51J1	Q9H342	316 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	PIGM	Q9H3S5	423 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ESRP2	Q9H6T0	727 aa	Known RBP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	REEP1	Q9H902	201 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	UNKL	Q9H9P5	680 aa	Known RBP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	IL1RL2	Q9HB29	575 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	TMEM138	Q9NPI0	162 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	NIT2	Q9NQR4	276 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ZFP57	Q9NU63	452 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	TMLHE	Q9NVH6	421 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	NDUFB11	Q9NX14	153 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	COQ3	Q9NZJ6	369 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	FLRT1	Q9NZU1	646 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	NLK	Q9UBE8	527 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	METTL1	Q9UBP6	276 aa	Known RBP	4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	ZNF222	Q9UK12	451 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	IKZF3	Q9UKT9	509 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	POFUT2	Q9Y2G5	429 aa		4.45	□□□□□ -1.7
PTCD3-212	ENST00000477520	MTMR11	A4FU01	709 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	FAM221B	A6H8Z2	402 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ARRDC5	A6NEK1	342 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	NAP1L6	A6NFF2	107 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	RRN3P2	A6NIE6	340 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	C1orf196	B1AJZ1	125 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	C5orf58	C9J3I9	102 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	TMEM189-UBE2V1	I3L0A0	370 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	MAN2B1	O00754	1011 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	WNT9A	O14904	365 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	HNRNPDL	O14979	420 aa	Known RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SLC16A4	O15374	487 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SLC31A2	O15432	143 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SLC7A4	O43246	635 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	PCDHGA12	O60330	932 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CRCP	O75575	148 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	C1R	P00736	705 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	APOC3	P02656	99 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	RLN2	P04090	185 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SERPINA5	P05154	406 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	FABP3	P05413	133 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	GJB1	P08034	283 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	NMB	P08949	121 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	GIP	P09681	153 aa	Predicted RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CCL5	P13501	91 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CYP4B1	P13584	511 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SELL	P14151	372 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	POU2F1	P14859	743 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	NCK1	P16333	377 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ZNF8	P17098	575 aa	Predicted RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	GJA1	P17302	382 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	LAG3	P18627	525 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	HDC	P19113	662 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	HIST1H2AD	P20671	130 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	NFYA	P23511	347 aa	Predicted RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ATP5A1	P25705	553 aa	Known RBP	4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	S100A11	P31949	105 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CSK	P41240	450 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ECI1	P42126	302 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	GLRB	P48167	497 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	DAP	P51397	102 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CAPZA1	P52907	286 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	OR4D2	P58180	307 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	KIAA1024L	P59773	190 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	RAB2A	P61019	212 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	SP4	Q02446	784 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ST3GAL4	Q11206	333 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ECH1	Q13011	328 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	LCP2	Q13094	533 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	CHAF1B	Q13112	559 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	DUSP8	Q13202	625 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	GPR17	Q13304	367 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	ILK	Q13418	452 aa		4.44	□□□□□ -1.7
PTCD3-212	ENST00000477520	MTM1	Q13496	603 aa		4.44	□□□□□ -1.7

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