RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ATXN8OSP0DMR3 200 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 MAOAP21397 527 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CNR2P34972 360 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 OR1D4P47884 311 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SPIBQ01892 262 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 MLIPQ5VWP3 458 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 KRT80Q6KB66 452 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 TCTN3Q6NUS6 607 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 SLC23A3Q6PIS1 610 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 FRRS1Q6ZNA5 592 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 GALNT5Q7Z7M9 940 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 KRT73Q86Y46 540 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 KMT5CQ86Y97 462 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PROX1Q92786 737 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 MUS81Q96NY9 551 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CLK4Q9HAZ1 481 aaKnown RBP12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PRTFDC1Q9NRG1 225 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 PNPLA3Q9NST1 481 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 RHCGQ9UBD6 479 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 KCND3Q9UK17 655 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 LIPT1Q9Y234 373 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 CHST2Q9Y4C5 530 aa12.87□□□□□ -0.35
PTPRF-202ENST00000372405 NUP210LQ5VU65 1888 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 DUXAA6NLW8 204 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 TNFRSF11BO00300 401 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 ARHGAP33O14559 1287 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 YKT6O15498 198 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 OR10H2O60403 315 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 SLITRK5O94991 958 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 TNFAIP8O95379 198 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 ITGA2P17301 1181 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 RHCEP18577 417 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 IGFBP5P24593 272 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 MAP4K2Q12851 820 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 GNA13Q14344 377 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 GANABQ14697 944 aaKnown RBP12.86□□□□□ -0.35
PTPRF-202ENST00000372405 EXOC3L2Q2M3D2 409 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 C16orf62Q7Z3J2 963 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 TSPYL5Q86VY4 417 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-202ENST00000372405 ST13P4Q8IZP2 240 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-202ENST00000372405 VWA5B2Q8N398 1253 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 VANGL1Q8TAA9 524 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-202ENST00000372405 CEP76Q8TAP6 659 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 ADAMTS18Q8TE60 1221 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 RASSF5Q8WWW0 418 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 ALOXE3Q9BYJ1 711 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 LANCL2Q9NS86 450 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 PDP2Q9P2J9 529 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 SLC6A14Q9UN76 642 aa12.86□□□□□ -0.35
PTPRF-202ENST00000372405 MRPS33Q9Y291 106 aaKnown RBP12.86□□□□□ -0.35
PTPRF-202ENST00000372405 M0R3H8 397 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 RPLP0P05388 317 aaKnown RBP12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ALAS2P22557 587 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ARHGDIAP52565 204 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 EFNA3P52797 238 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 HMGA2P52926 109 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 STX4Q12846 297 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ARHGAP11BQ3KRB8 267 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 CCNJQ5T5M9 372 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ATAD3BQ5T9A4 648 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ARHGAP22Q7Z5H3 698 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 VRK2Q86Y07 508 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 HOXB13Q92826 284 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-202ENST00000372405 PIGUQ9H490 435 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 NECTIN3Q9NQS3 549 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 FGF21Q9NSA1 209 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 RLIMQ9NVW2 624 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 C3orf18Q9UK00 162 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 BLACEA4D250 179 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 H3BNH8 94 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 PCDH17O14917 1159 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 TOX3O15405 576 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-202ENST00000372405 CPNE6O95741 557 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 LGI1O95970 557 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 PABPC4LP0CB38 370 aaKnown RBP12.85□□□□□ -0.35
PTPRF-202ENST00000372405 HSD17B7P56937 341 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ZNF528Q3MIS6 628 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 TYW3Q6IPR3 259 aaKnown RBP12.85□□□□□ -0.35
PTPRF-202ENST00000372405 GALNT12Q8IXK2 581 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 CDRT4Q8N9R6 151 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 RCBTB1Q8NDN9 531 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 PIK3C3Q8NEB9 887 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 OR52R1Q8NGF1 315 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 PIK3R3Q92569 461 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 RIT1Q92963 219 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 RNF31Q96EP0 1072 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 SDF2Q99470 211 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 FBXO34Q9NWN3 711 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 NDOR1Q9UHB4 597 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 GMEB2Q9UKD1 530 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 ACAD8Q9UKU7 415 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 MKLN1Q9UL63 735 aa12.85□□□□□ -0.35
PTPRF-202ENST00000372405 CENPVL1A0A0U1RR11 272 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 CLDN4O14493 209 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 SEC24DO94855 1032 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-202ENST00000372405 CER1O95813 267 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 EPHA2P29317 976 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 SSTR4P31391 388 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 EMDP50402 254 aa12.84□□□□□ -0.35
PTPRF-202ENST00000372405 EPS8Q12929 822 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms