RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF671Q8TAW3 534 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HMGCLL1Q8TB92 370 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TANKQ92844 425 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KCTD7Q96MP8 289 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SCN2AQ99250 2005 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 EFCAB11Q9BUY7 163 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TMEM138Q9NPI0 162 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IL20RAQ9UHF4 553 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TDRD6O60522 2096 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 BDP1A6H8Y1 2624 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CLDN24A6NM45 220 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MOSPD3O75425 235 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ACPPP15309 386 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SSTR4P31391 388 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TSPAN5P62079 268 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SIM1P81133 766 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GALK2Q01415 458 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SRSF11Q05519 484 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF750Q32MQ0 723 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CDONQ4KMG0 1287 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CREB3L2Q70SY1 520 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CCDC36Q8IYA8 594 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR6F1Q8NGZ6 308 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SMPDL3AQ92484 453 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CMTM7Q96FZ5 175 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF514Q96K75 400 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GAS2L1Q99501 681 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ERVMER34-1Q9H9K5 563 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 THUMPD1Q9NXG2 353 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GABRR3A8MPY1 467 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 B4GALT2O60909 372 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ETHE1O95571 254 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ITGB7P26010 798 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PIGAP37287 484 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ASMTP46597 345 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GMFBP60983 142 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NKX3-2P78367 333 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IFITM3Q01628 133 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GPR19Q15760 415 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CTF1Q16619 201 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DUOXA1Q1HG43 343 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CDKL4Q5MAI5 379 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GCNT6Q5T4J0 391 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZC3H14Q6PJT7 736 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TSPYL5Q86VY4 417 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CBARPQ8N350 705 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ESX1Q8N693 406 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TSTD1Q8NFU3 115 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR5D16Q8NGK9 328 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GPR151Q8TDV0 419 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ST8SIA2Q92186 375 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HDHD5Q9BXW7 423 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC6A13Q9NSD5 602 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 B3GNT2Q9NY97 397 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRPS1Q9UHF7 1281 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 UBE2QL1A1L167 161 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR6C74A6NCV1 312 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SMLR1H3BR10 107 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GAPDHSO14556 408 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PGRMC2O15173 223 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SCO2O43819 266 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CH25HO95992 272 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C1QCP02747 245 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HPGDP15428 266 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 STAT5AP42229 794 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CENPAP49450 140 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HOXC5Q00444 222 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MLLT1Q03111 559 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TFF2Q03403 129 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SCARB2Q14108 478 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HEPACAMQ14CZ8 416 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LPAL2Q16609 132 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KHDRBS2Q5VWX1 349 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 Q6ZPB1 254 aaPredicted RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 B3GNT8Q7Z7M8 397 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CYP4Z1Q86W10 505 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IZUMO1Q8IYV9 350 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MFSD4AQ8N468 514 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ISG20Q96AZ6 181 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TMEM168Q9H0V1 697 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GPR83Q9NYM4 423 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PCDHGB3Q9Y5G1 929 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PCDHGB2Q9Y5G2 931 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CKAP5Q14008 2032 aa10.19□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 H7C0S8 307 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CDK2AP1O14519 115 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF780AO75290 641 aaPredicted RBP10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 EEDO75530 441 aaKnown RBP10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C1orf105O95561 183 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IGHA2P01877 340 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CKMT1AP12532 417 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LAMP2P13473 410 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 AP2S1P53680 142 aaPredicted RBP10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TAP2Q03519 686 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF763Q0D2J5 394 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NPRL3Q12980 569 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ANXA8L1Q5VT79 327 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF691Q5VV52 312 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SMARCD3Q6STE5 483 aa10.18□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DPPA4Q7L190 304 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms