RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 TUBA1AQ71U36 451 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 KLBQ86Z14 1044 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 CADM2Q8N3J6 435 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 OR51A7Q8NH64 312 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 FCGR1BQ92637 280 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 SLC35B4Q969S0 331 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 RNFT2Q96EX2 444 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 NELL2Q99435 816 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 DPH7Q9BTV6 452 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ZCCHC2Q9C0B9 1178 aaKnown RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 C1GALT1Q9NS00 363 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 SLC27A6Q9Y2P4 619 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 N6AMT1Q9Y5N5 214 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 KCNE3Q9Y6H6 103 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 LAMA1P25391 3075 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 SAGE2PA6NJ88 616 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 FFAR1O14842 300 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 LINC01565O15544 149 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PI15O43692 258 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 NARSO43776 548 aaKnown RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 CDC123O75794 336 aaPredicted RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 ACVR1BP36896 505 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ZNF630Q2M218 657 aaPredicted RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 ODF4Q2M2E3 257 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 C6orf132Q5T0Z8 1188 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ATAD3CQ5T2N8 411 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 TCTN3Q6NUS6 607 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 FAHD1Q6P587 224 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PLEKHM3Q6ZWE6 761 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PDZD3Q86UT5 571 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 OR14C36Q8NHC7 312 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 DNAJB8Q8NHS0 232 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 UBTD2Q8WUN7 234 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 VMP1Q96GC9 406 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 SP140LQ9H930 580 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ENTPD4Q9Y227 616 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 MED12Q93074 2177 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 LRRK1Q38SD2 2015 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 HPGDSO60760 199 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 MPC1LP0DKB6 136 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 SAGP10523 405 aaPredicted RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 ADH5P11766 374 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PAICSP22234 425 aaKnown RBP12.63□□□□□ -0.39
USP42-203ENST00000426246 AHRP35869 848 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ETV5P41161 510 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ETV1P50549 477 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 QPRTQ15274 297 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 FXNQ16595 210 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ZNF542PQ5EBM4 170 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 ZNF311Q5JNZ3 666 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PPP2R2DQ66LE6 453 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 POMZP3Q6PJE2 187 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 PARGQ86W56 976 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 TRAM1L1Q8N609 369 aa12.63□□□□□ -0.39
USP42-203ENST00000426246 DVL2O14641 736 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SLC9A3R1O14745 358 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 SMAD9O15198 467 aaKnown RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 PDE9AO76083 593 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 GNSP15586 552 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 PTX3P26022 381 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 SIM1P81133 766 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 MTAPQ13126 283 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 FAM27D1Q5T7N8 215 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 BEST4Q8NFU0 473 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 OR52P1PQ8NH57 321 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SMPDL3AQ92484 453 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SMARCD2Q92925 531 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 PLA2G12AQ9BZM1 189 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 B3GNT3Q9Y2A9 372 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 A0A1W2PP55 124 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TSPAN11A1L157 253 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 H0YIV9 168 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 RNASET2O00584 256 aaKnown RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 SLCO2B1O94956 709 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SLC2A2P11168 524 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 IL7P13232 177 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 RHCEP18577 417 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 CERS1P27544 350 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 NTSP30990 170 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SCN1BQ07699 218 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 OTPQ5XKR4 325 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 MTSS1LQ765P7 747 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 SIMC1Q8NDZ2 872 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 ZFR2Q9UPR6 939 aaKnown RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3DA0A087WVF3 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3IA0A087WXS9 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3EA0A087X179 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3KA0A087X1G2 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 C1orf226A1L170 272 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3FA6NER0 549 aaPredicted RBP12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3LB9A6J9 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 HBQ1P09105 142 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 TBC1D3HP0C7X1 549 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 MC3RP41968 323 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 CTBP2P56545 445 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 CXCR4P61073 352 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 BTN3A2P78410 334 aa12.62□□□□□ -0.39
USP42-203ENST00000426246 HYAL1Q12794 435 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms