RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 BHLHE41Q9C0J9 482 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 QRSL1Q9H0R6 528 aaKnown RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 TMEM245Q9H330 911 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 PAK6Q9NQU5 681 aaPredicted RBP17.36■□□□□ 0.37
UPF1-210ENST00000600689 USP34Q70CQ2 3546 aa17.36■□□□□ 0.37
UPF1-210ENST00000600689 ZNF821O75541 412 aaPredicted RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 PIPP12273 146 aaPredicted RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 SPINT3P49223 89 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 CNTN1Q12860 1018 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 SYPL1Q16563 259 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 ESCO2Q56NI9 601 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 MEDAGQ5VYS4 303 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 UCN3Q969E3 161 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 ARPC5LQ9BPX5 153 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 ZSCAN5AQ9BUG6 496 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 DPCDQ9BVM2 203 aaPredicted RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 RIOK2Q9BVS4 552 aaKnown RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 ZNF224Q9NZL3 707 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 EXTL2Q9UBQ6 330 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 KLHL21Q9UJP4 597 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 SLC9A8Q9Y2E8 581 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 INSL5Q9Y5Q6 135 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 CKMP06732 381 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 MMP11P24347 488 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 HMGA2P52926 109 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 SNRPGP62308 76 aaKnown RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 TBPL1P62380 186 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 ZNF628Q5EBL2 1059 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 HSDL2Q6YN16 418 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 HSD11B1LQ7Z5J1 315 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 ZNF366Q8N895 744 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 OR4K5Q8NGD3 323 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 AP3S1Q92572 193 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 AKAP1Q92667 903 aaKnown RBP eCLIP17.35■□□□□ 0.373e-7■■■■■ 28.2
UPF1-210ENST00000600689 TRMT2BQ96GJ1 504 aaKnown RBP17.35■□□□□ 0.37
UPF1-210ENST00000600689 CNIH4Q9P003 139 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 NUMA1Q14980 2115 aa17.35■□□□□ 0.37
UPF1-210ENST00000600689 H0YIV9 168 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 CATP04040 527 aaKnown RBP17.34■□□□□ 0.37
UPF1-210ENST00000600689 SMSP52788 366 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 BNC1Q01954 994 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 TPGS2Q68CL5 300 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 ZER1Q7Z7L7 766 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 BPHLQ86WA6 291 aaPredicted RBP17.34■□□□□ 0.37
UPF1-210ENST00000600689 SLC39A11Q8N1S5 342 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 CLDN22Q8N7P3 220 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 C1QTNF6Q9BXI9 259 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 MED28Q9H204 178 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 SLC28A3Q9HAS3 691 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 SLAMF7Q9NQ25 335 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 ATF4P18848 351 aaPredicted RBP17.34■□□□□ 0.37
UPF1-210ENST00000600689 TEKQ02763 1124 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 GLRX5Q86SX6 157 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 CDH24Q86UP0 819 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.34■□□□□ 0.37
UPF1-210ENST00000600689 ZNF558Q96NG5 402 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 FNDC11Q9BVV2 318 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 IL21Q9HBE4 155 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 UNC80Q8N2C7 3258 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 TSPAN4O14817 238 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 SERPIND1P05546 499 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 BUD31P41223 144 aaPredicted RBP17.34■□□□□ 0.37
UPF1-210ENST00000600689 GIPRP48546 466 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 PLK5Q496M5 336 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 MAGEB10Q96LZ2 347 aaPredicted RBP17.34■□□□□ 0.37
UPF1-210ENST00000600689 TMEM38AQ9H6F2 299 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 GLTPQ9NZD2 209 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 KCNN3Q9UGI6 736 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 FBXW2Q9UKT8 454 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 MGAT4BQ9UQ53 548 aa17.34■□□□□ 0.37
UPF1-210ENST00000600689 A0A0A6YYJ9 748 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 PIPSLA2A3N6 862 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 CPEP16870 476 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 PKLRP30613 574 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 PCBP3P57721 371 aaKnown RBP17.33■□□□□ 0.37
UPF1-210ENST00000600689 GAREM2Q75VX8 874 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 KLK6Q92876 244 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 ARMC5Q96C12 935 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 SAP130Q9H0E3 1048 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 PPP1R3EQ9H7J1 279 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 NUDT15Q9NV35 164 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 TAAR2Q9P1P5 351 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 STOML2Q9UJZ1 356 aa17.33■□□□□ 0.37
UPF1-210ENST00000600689 ZFR2Q9UPR6 939 aaKnown RBP17.33■□□□□ 0.37
UPF1-210ENST00000600689 EEF1E1O43324 174 aaKnown RBP17.33■□□□□ 0.36
UPF1-210ENST00000600689 URODP06132 367 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 GABRR2P28476 465 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 NNMTP40261 264 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 RPA4Q13156 261 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 C12orf73Q69YU5 71 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 SLCO4C1Q6ZQN7 724 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 ANGPTL6Q8NI99 470 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 ZNF480Q8WV37 535 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 RETREG1Q9H6L5 497 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 FZD3Q9NPG1 666 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 NKIRAS2Q9NYR9 191 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 NCKAP1Q9Y2A7 1128 aa17.33■□□□□ 0.36
UPF1-210ENST00000600689 MYOFQ9NZM1 2061 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 MPC1LP0DKB6 136 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 UBL4AP11441 157 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms