RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 EEF1E1O43324 174 aaKnown RBP15.39■□□□□ 0.05
CLN3-211ENST00000564091 SEMA3DO95025 777 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 EPXP11678 715 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 CPMP14384 443 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 KRT15P19012 456 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 S1PR1P21453 382 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 GPX3P22352 226 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 CTSSP25774 331 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 PTPN6P29350 595 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 NAGLUP54802 743 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 ADAM8P78325 824 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 RPP38P78345 283 aaKnown RBP15.39■□□□□ 0.05
CLN3-211ENST00000564091 CAV1Q03135 178 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 SF3B4Q15427 424 aaKnown RBP eCLIP15.39■□□□□ 0.052e-7■■■■□ 24.8
CLN3-211ENST00000564091 SGO1Q5FBB7 561 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 FAM111BQ6SJ93 734 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 ANGPTL8Q6UXH0 198 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 PAMR1Q6UXH9 720 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 CCDC91Q7Z6B0 441 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 MMP21Q8N119 569 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 PLD6Q8N2A8 252 aaKnown RBP15.39■□□□□ 0.05
CLN3-211ENST00000564091 C9orf106Q8NAJ2 232 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 OR7G1Q8NGA0 311 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 NTNG2Q96CW9 530 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 PHF21BQ96EK2 531 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 TMEM41AQ96HV5 264 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 ALPK1Q96QP1 1244 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 MRPL1Q9BYD6 325 aaKnown RBP15.39■□□□□ 0.05
CLN3-211ENST00000564091 VPS11Q9H270 941 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 METTL7AQ9H8H3 244 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 DLL4Q9NR61 685 aa15.39■□□□□ 0.05
CLN3-211ENST00000564091 CCDC189A1A4V9 331 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 MBD3L4A6NDZ8 208 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 MBD3L3A6NE82 208 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 MBD3L5A6NJ08 208 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 ALDOAP04075 364 aaKnown RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 PORP16435 677 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 TYK2P29597 1187 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 SOX18P35713 384 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 FEN1P39748 380 aaKnown RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 SLCO1A2P46721 670 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 CCNG1P51959 295 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 MGAT2Q10469 447 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 CCNYL2Q5T2Q4 361 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 C6orf163Q5TEZ5 329 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 FRG2Q64ET8 278 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 KLC3Q6P597 504 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 KIF18BQ86Y91 864 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 SIMC1Q8NDZ2 872 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 FAM83FQ8NEG4 500 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 MBD3L2Q8NHZ7 208 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 MBD6Q96DN6 1003 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 NSUN5Q96P11 429 aaKnown RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 FRG2BQ96QU4 278 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 NODALQ96S42 347 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 BRINP2Q9C0B6 783 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 EHD3Q9NZN3 535 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 BCAP29Q9UHQ4 241 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 CES1P1Q9UKY3 287 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 RPH3AQ9Y2J0 694 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 HRNRQ86YZ3 2850 aaPredicted RBP15.38■□□□□ 0.05
CLN3-211ENST00000564091 EML6Q6ZMW3 1958 aa15.38■□□□□ 0.05
CLN3-211ENST00000564091 ESYT3A0FGR9 886 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 PPM1BO75688 479 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ATE1O95260 518 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 OPRM1P35372 400 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 FOXF2Q12947 444 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 EXOSC7Q15024 291 aaKnown RBP15.37■□□□□ 0.05
CLN3-211ENST00000564091 TECRLQ5HYJ1 363 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 UBAP2Q5T6F2 1119 aaKnown RBP15.37■□□□□ 0.05
CLN3-211ENST00000564091 FAM219BQ5XKK7 198 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 TTC19Q6DKK2 380 aaPredicted RBP15.37■□□□□ 0.05
CLN3-211ENST00000564091 PLXDC2Q6UX71 529 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 C17orf47Q8NEP4 570 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 OR1J4Q8NGS1 313 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 HGDQ93099 445 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 OMA1Q96E52 524 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ITPAQ9BY32 194 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 RAB17Q9H0T7 212 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 PLEKHF2Q9H8W4 249 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 CALHM2Q9HA72 323 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ZBTB26Q9HCK0 441 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 GALNT9Q9HCQ5 603 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 SERHLQ9NQF3 203 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 AHSPQ9NZD4 102 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 JKAMPQ9P055 326 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ADAM29Q9UKF5 820 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 PCDHA9Q9Y5H5 950 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ABCA2Q9BZC7 2435 aa15.37■□□□□ 0.05
CLN3-211ENST00000564091 ICOSLGO75144 302 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 ERAL1O75616 437 aaKnown RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 RAF1P04049 648 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 TMIGD3P0DMS9 266 aaPredicted RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 NAGAP17050 411 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 CNTFP26441 200 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 DEKP35659 375 aaKnown RBP15.36■□□□□ 0.05
CLN3-211ENST00000564091 PTGDSP41222 190 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 SERPINB8P50452 374 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 MAPK12P53778 367 aa15.36■□□□□ 0.05
CLN3-211ENST00000564091 SRYQ05066 204 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms