RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KRTAP10-9P60411 292 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 CSTF3Q12996 717 aaKnown RBP12.94□□□□□ -0.34
UPF3A-204ENST00000475218 RPS6KA2Q15349 733 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 NNATQ16517 81 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 PRSS53Q2L4Q9 553 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TRMT12Q53H54 448 aaKnown RBP12.94□□□□□ -0.34
UPF3A-204ENST00000475218 VWA5B2Q8N398 1253 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 OR7G1Q8NGA0 311 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 LILRB4Q8NHJ6 448 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 SPPL2AQ8TCT8 520 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 CA5BP1Q8WTZ4 195 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TTYH2Q9BSA4 534 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 ANKRA2Q9H9E1 313 aa12.94□□□□□ -0.34
UPF3A-204ENST00000475218 TRGV5A0A0B4J1U4 118 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 NKX2-6A6NCS4 301 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 BCKDKO14874 412 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 NME6O75414 186 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ERAL1O75616 437 aaKnown RBP12.93□□□□□ -0.34
UPF3A-204ENST00000475218 PROCP04070 461 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 GLI4P10075 376 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ABCD3P28288 659 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ADH7P40394 386 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 TRA2BP62995 288 aaKnown RBP12.93□□□□□ -0.34
UPF3A-204ENST00000475218 LCP2Q13094 533 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ZNF585AQ6P3V2 769 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 SCIMPQ6UWF3 145 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 GDF7Q7Z4P5 450 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 EID3Q8N140 333 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 C17orf47Q8NEP4 570 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 METTL6Q8TCB7 284 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 KLHL29Q96CT2 875 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 SPOCK3Q9BQ16 436 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 DOHHQ9BU89 302 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ITPAQ9BY32 194 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ANGPTL4Q9BY76 406 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 UBQLN3Q9H347 655 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ACKR4Q9NPB9 350 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 MCM8Q9UJA3 840 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 BOKQ9UMX3 212 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-204ENST00000475218 PLLPQ9Y342 182 aa12.93□□□□□ -0.34
UPF3A-204ENST00000475218 ARHGAP21Q5T5U3 1957 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 KIAA1549Q9HCM3 1950 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 KDM4EB2RXH2 506 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 HCN1O60741 890 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 KRT6AP02538 564 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 KRT6BP04259 564 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 IL3P08700 152 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 PCSK2P16519 638 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 CSNK2A2P19784 350 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 CHRNB4P30926 498 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 PTGDSP41222 190 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 KRT6CP48668 564 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 MAN2A2P49641 1150 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 EMDP50402 254 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 PKNOX1P55347 436 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 MRPS35P82673 323 aaKnown RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ZNF628Q5EBL2 1059 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 TMEM211Q6ICI0 200 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ZYG11AQ6WRX3 759 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 SEM1Q6ZVN7 128 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 LIX1LQ8IVB5 337 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 SLC22A9Q8IVM8 553 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 TAGAPQ8N103 731 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 EIF1ADQ8N9N8 165 aaKnown RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 RND1Q92730 232 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 DIO2Q92813 273 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 HGDQ93099 445 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 RILPQ96NA2 401 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 BRINP2Q9C0B6 783 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 L2HGDHQ9H9P8 463 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 RYDENQ9NUL5 291 aaKnown RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 COQ3Q9NZJ6 369 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 DLGAP4Q9Y2H0 992 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 A0A0G2JNJ9 132 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 SERTM1A2A2V5 107 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 PCDH7O60245 1069 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ULK1O75385 1050 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ESRRBO95718 433 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ABCB1P08183 1280 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 CASP3P42574 277 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 SLCO1A2P46721 670 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 TRPC1P48995 793 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 ALDH9A1P49189 494 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 GALNT18Q6P9A2 607 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 OR52R1Q8NGF1 315 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 NEIL3Q8TAT5 605 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 C16orf78Q8WTQ4 265 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 LURAP1Q96LR2 239 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 JSRP1Q96MG2 331 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-204ENST00000475218 GNRHR2Q96P88 292 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 QPCTLQ9NXS2 382 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 Q9UFV3 132 aa12.92□□□□□ -0.34
UPF3A-204ENST00000475218 INTS1Q8N201 2190 aaKnown RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 HRNRQ86YZ3 2850 aaPredicted RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 GOLGA6L10A6NI86 522 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 FAM90A27PA6NNH2 459 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 PLIN3O60664 434 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 GUCY1B2O75343 617 aa12.91□□□□□ -0.34
UPF3A-204ENST00000475218 ENO1P06733 434 aaKnown RBP12.91□□□□□ -0.34
UPF3A-204ENST00000475218 HMOX2P30519 316 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms