RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 RPP25Q9BUL9 199 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 FNDC11Q9BVV2 318 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 WDR12Q9GZL7 423 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 SAP130Q9H0E3 1048 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 OR51I1Q9H343 314 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 SEMA6CQ9H3T2 930 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 PIGUQ9H490 435 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 HMG20AQ9NP66 347 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 ISYNA1Q9NPH2 558 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 ACOT13Q9NPJ3 140 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 TBC1D23Q9NUY8 699 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 WSB2Q9NYS7 404 aaPredicted RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 CPNE7Q9UBL6 633 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 WARS2Q9UGM6 360 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 C19orf53Q9UNZ5 99 aaPredicted RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 TESMINQ9Y4I5 508 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 MAGED1Q9Y5V3 778 aaPredicted RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 CFAP20Q9Y6A4 193 aaKnown RBP8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 NUMA1Q14980 2115 aa8.21□□□□□ -1.1
SNRNP40-202ENST00000373720 PRAMEF33A0A0G2JMD5 474 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SH3PXD2BA1X283 911 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PTGES3LE9PB15 166 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 RTCAO00442 366 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 AP3D1O14617 1153 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PCDHGA12O60330 932 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PRAMEF10O60809 474 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SH3BGRLO75368 114 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CLPXO76031 633 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 OR5F1O95221 314 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 GPR75O95800 540 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ALPPP05187 535 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 DBIP07108 87 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 UGT2B7P16662 529 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CD27P26842 260 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PSMB5P28074 263 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 AQP1P29972 269 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 LCN1P31025 176 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 MAT2AP31153 395 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ACSL1P33121 698 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 STAT5AP42229 794 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CTSKP43235 329 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 MAN2A2P49641 1150 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SMSP52788 366 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PSMD4P55036 377 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PPP2CBP62714 309 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PPP2CAP67775 309 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 RHAGQ02094 409 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FOXC1Q12948 553 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 KRR1Q13601 381 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FAM53BQ14153 422 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PUM1Q14671 1186 aaKnown RBP eCLIP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 NR1D2Q14995 579 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 C16orf72Q14CZ0 275 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 PTGES3Q15185 160 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 NEDD8Q15843 81 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 DUSP7Q16829 419 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CTU2Q2VPK5 515 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 LRIT3Q3SXY7 679 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TCTE1Q5JU00 501 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ARMC4Q5T2S8 1044 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SLX4IPQ5VYV7 408 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FBXO42Q6P3S6 717 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF793Q6ZN11 406 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 C16orf62Q7Z3J2 963 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ZNF438Q7Z4V0 828 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 VN1R4Q7Z5H5 301 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TSEN54Q7Z6J9 526 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 GALNT5Q7Z7M9 940 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 RANBP3LQ86VV4 465 aaPredicted RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 EGFL6Q8IUX8 553 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ENTHD1Q8IYW4 607 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CYP4Z2PQ8N1L4 340 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 STX19Q8N4C7 294 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 DNAJC22Q8N4W6 341 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FBXL6Q8N531 539 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FAM26EQ8N5C1 309 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 AMER2Q8N7J2 671 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 OR8K5Q8NH50 307 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 OR5AK3PQ8NH89 298 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FLVCR1-AS1Q8TAF5 88 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 GNPDA2Q8TDQ7 276 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FAR1Q8WVX9 515 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 OSTF1Q92882 214 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 RFKQ969G6 155 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TMIGD2Q96BF3 282 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CNRIP1Q96F85 164 aaPredicted RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TCTN2Q96GX1 697 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 HS6ST2Q96MM7 605 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 LRFN5Q96NI6 719 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 ARHGDIGQ99819 225 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FUNDC2Q9BWH2 189 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 POLDIP3Q9BY77 421 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 CCDC90BQ9GZT6 254 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 LHPPQ9H008 270 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SLC25A19Q9HC21 320 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 FZD3Q9NPG1 666 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 SLAMF7Q9NQ25 335 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TBCCD1Q9NVR7 557 aa8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 MRPS18AQ9NVS2 196 aaKnown RBP8.2□□□□□ -1.1
SNRNP40-202ENST00000373720 TEX10Q9NXF1 929 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms