RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TSPAN33Q86UF1 283 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 LINC00471Q8N535 108 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 KCT2Q8NC54 265 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ELMOD3Q96FG2 381 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 GPR78Q96P69 363 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 SYNDIG1Q9H7V2 258 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ATPIF1Q9UII2 106 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ARHGAP33O14559 1287 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 PDCD5O14737 125 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 KELP23276 732 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ACVR2AP27037 513 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 CTSOP43234 321 aaPredicted RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 SEC13P55735 322 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 EIF2B5Q13144 721 aaKnown RBP14.62□□□□□ -0.07
SHH-201ENST00000297261 BTN1A1Q13410 526 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FRMPD2BQ6IN97 320 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 NLGN4XQ8N0W4 816 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 DNAJC22Q8N4W6 341 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 TEX26Q8N6G2 289 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 OR4K5Q8NGD3 323 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ZCCHC10Q8TBK6 192 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 CXorf40BQ96DE9 158 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 TM9SF2Q99805 663 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 FBXL3Q9UKT7 428 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ERVW-1Q9UQF0 538 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 CDH10Q9Y6N8 788 aa14.62□□□□□ -0.07
SHH-201ENST00000297261 ANKRD28O15084 1053 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 OR12D1P0DN82 309 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 SRCP12931 536 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 VIPR1P32241 457 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 GDI2P50395 445 aaKnown RBP14.61□□□□□ -0.07
SHH-201ENST00000297261 MC1RQ01726 317 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 RGNQ15493 299 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 MTFR2Q6P444 385 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 OR8K5Q8NH50 307 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 GRHL3Q8TE85 626 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 MYEOVQ96EZ4 313 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 KXD1Q9BQD3 176 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 TAC3Q9UHF0 121 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 ALG5Q9Y673 324 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 WWP2O00308 870 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 IL3P08700 152 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 LHCGRP22888 699 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 TACR1P25103 407 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 SMCO1Q147U7 214 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 CCDC58Q4VC31 144 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 GDPD3Q7L5L3 318 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 ZNF627Q7L945 461 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 PMEPA1Q969W9 287 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 OTUB2Q96DC9 234 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 OR5M11Q96RB7 305 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 OR10A4Q9H209 315 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 NEUROD4Q9HD90 331 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 UTS2RQ9UKP6 389 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 SARDHQ9UL12 918 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 NOP16Q9Y3C1 178 aaKnown RBP14.61□□□□□ -0.07
SHH-201ENST00000297261 KMOO15229 486 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 CSNK2A2P19784 350 aaPredicted RBP14.61□□□□□ -0.07
SHH-201ENST00000297261 SOX2P48431 317 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 SLC46A3Q7Z3Q1 461 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 MFSD6LQ8IWD5 586 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 UHRF1Q96T88 793 aaPredicted RBP14.61□□□□□ -0.07
SHH-201ENST00000297261 CD180Q99467 661 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 C1QTNF7Q9BXJ2 289 aa14.61□□□□□ -0.07
SHH-201ENST00000297261 ADAP00813 363 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 PCCBP05166 539 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 NUDT7P0C024 238 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ZDHHC11BP0C7U3 371 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 PIN1Q13526 163 aaPredicted RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 GALEQ14376 348 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 PTPRRQ15256 657 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 LRIT3Q3SXY7 679 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ELP2Q6IA86 826 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 DHRS4L2Q6PKH6 230 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 HTR3DQ70Z44 454 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 FAM129CQ86XR2 697 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 COX18Q8N8Q8 333 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ZNF354BQ96LW1 612 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ZBP1Q9H171 429 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 KCNK12Q9HB15 430 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ARPC4-TTLL3A0A0A6YYG9 625 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TTC34A8MYJ7 566 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 SMLR1H3BR10 107 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 FXYD1O00168 92 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 HPGDSO60760 199 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 ITGA10O75578 1167 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 OSMP13725 252 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 JUPP14923 745 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 APEX1P27695 318 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 PDGFRLQ15198 375 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 CATSPEREQ5SY80 951 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 MEX3DQ86XN8 651 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 CHST14Q8NCH0 376 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 WBP2Q969T9 261 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 S100A16Q96FQ6 103 aaKnown RBP14.6□□□□□ -0.07
SHH-201ENST00000297261 ACPTQ9BZG2 426 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 MTG2Q9H4K7 406 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 A0A0G2JMZ2 1700 aa14.6□□□□□ -0.07
SHH-201ENST00000297261 TBC1D3DA0A087WVF3 549 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms