RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 UCK1Q9HA47 277 aa20.76■□□□□ 0.91
PNKP-220ENST00000627232 CALML5Q9NZT1 146 aa20.76■□□□□ 0.91
PNKP-220ENST00000627232 LIPT1Q9Y234 373 aa20.76■□□□□ 0.91
PNKP-220ENST00000627232 SPACA6W5XKT8 324 aa20.76■□□□□ 0.91
PNKP-220ENST00000627232 GOLGA4Q13439 2230 aaKnown RBP20.76■□□□□ 0.91
PNKP-220ENST00000627232 TDRD6O60522 2096 aaKnown RBP20.75■□□□□ 0.91
PNKP-220ENST00000627232 A0A1W2PS29 197 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 XKP51811 444 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 SNRPNP63162 240 aaKnown RBP20.75■□□□□ 0.91
PNKP-220ENST00000627232 TUBA3CQ13748 450 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 RAB39AQ14964 217 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.75■□□□□ 0.91
PNKP-220ENST00000627232 KLHL35Q6PF15 583 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 GKN2Q86XP6 184 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 SPARTQ8N0X7 666 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 ZNF420Q8TAQ5 688 aaPredicted RBP20.75■□□□□ 0.91
PNKP-220ENST00000627232 CNIH3Q8TBE1 160 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 OR7D2Q96RA2 312 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 RSPO3Q9BXY4 272 aaPredicted RBP20.75■□□□□ 0.91
PNKP-220ENST00000627232 ACTRT3Q9BYD9 372 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 ZNF556Q9HAH1 456 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 CXorf21Q9HAI6 301 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 ACAD8Q9UKU7 415 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 TPRKBQ9Y3C4 175 aa20.75■□□□□ 0.91
PNKP-220ENST00000627232 B4DGG1 531 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 PCDH17O14917 1159 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 CBLP22681 906 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 MAN2A2P49641 1150 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 SMIM11AP58511 58 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 RACK1P63244 317 aaKnown RBP20.74■□□□□ 0.91
PNKP-220ENST00000627232 FUT5Q11128 374 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 CLVS1Q8IUQ0 354 aaPredicted RBP20.74■□□□□ 0.91
PNKP-220ENST00000627232 PARP8Q8N3A8 854 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 ALPK1Q96QP1 1244 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 SCN3BQ9NY72 215 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 SNX5Q9Y5X3 404 aa20.74■□□□□ 0.91
PNKP-220ENST00000627232 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 ENO4A6NNW6 628 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 FFAR1O14842 300 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 CASC3O15234 703 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 MRPS14O60783 128 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 OXSR1O95747 527 aaPredicted RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 CHRM4P08173 479 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 HTR1AP08908 422 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 EPHA2P29317 976 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PTGER1P34995 402 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 GGT2P36268 569 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 FASLGP48023 281 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 CSNK2BP67870 215 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 GANABQ14697 944 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 NEDD8Q15843 81 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 B3GNT8Q7Z7M8 397 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 TAGAPQ8N103 731 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 CSNK1A1LQ8N752 337 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 BPIFB6Q8NFQ5 453 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 GIMAP5Q96F15 307 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 C16orf58Q96GQ5 468 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 YIPF4Q9BSR8 244 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 RLIMQ9NVW2 624 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 MRPS2Q9Y399 296 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 TMEM131Q92545 1883 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 DUXAA6NLW8 204 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 TLR4O00206 839 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 GALR3O60755 368 aaPredicted RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 AGR2O95994 175 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 EIF2S1P05198 315 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 IFI6P09912 130 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 DCKP27707 260 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 SLC5A2P31639 672 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PROX2Q3B8N5 592 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PUS10Q3MIT2 529 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 XAF1Q6GPH4 301 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 TCTN3Q6NUS6 607 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 ZNF761Q86XN6 746 aaPredicted RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 OR13F1Q8NGS4 319 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 KAT2AQ92830 837 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 MS4A4EQ96PG1 132 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 TRNT1Q96Q11 434 aaKnown RBP20.73■□□□□ 0.91
PNKP-220ENST00000627232 NODALQ96S42 347 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 CSF3RQ99062 836 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PINK1Q9BXM7 581 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 FOXQ1Q9C009 403 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 DUSP21Q9H596 190 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 FANCEQ9HB96 536 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 GIN1Q9NXP7 522 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PTGFRNQ9P2B2 879 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 FBXL21Q9UKT6 434 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 TMCC3Q9ULS5 477 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 SLC9A8Q9Y2E8 581 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 PCDHGA6Q9Y5G7 932 aa20.73■□□□□ 0.91
PNKP-220ENST00000627232 SEC14L2O76054 403 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 LGI1O95970 557 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 CPMP14384 443 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 PPP1CAP62136 330 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 SIM1P81133 766 aaPredicted RBP20.72■□□□□ 0.91
PNKP-220ENST00000627232 LTB4RQ15722 352 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 GPAT3Q53EU6 434 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 ATAD3BQ5T9A4 648 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 CDC73Q6P1J9 531 aa20.72■□□□□ 0.91
PNKP-220ENST00000627232 FAM92BQ6ZTR7 304 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms