RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NDOR1Q9UHB4 597 aa7.09□□□□□ -1.27
LIMA1-213ENST00000552720 ENOPH1Q9UHY7 261 aa7.09□□□□□ -1.27
LIMA1-213ENST00000552720 MGAT4BQ9UQ53 548 aa7.09□□□□□ -1.27
LIMA1-213ENST00000552720 BOLA1Q9Y3E2 137 aa7.09□□□□□ -1.27
LIMA1-213ENST00000552720 A0A1W2PQ09 198 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 HYKKA2RU49 373 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF670-ZNF695F2Z2N8 137 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 FAAHO00519 579 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MYL12BO14950 172 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 OR1F1O43749 312 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 UGT2B17O75795 530 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SEMA3DO95025 777 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SNX4O95219 450 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 APOA1P02647 267 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 EPHX1P07099 455 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MSL3P1P0C860 447 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 IL7P13232 177 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 PTNP21246 168 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 GPC1P35052 558 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 RORCP51449 518 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 EPHA5P54756 1037 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ST8SIA6P61647 398 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 PSPHP78330 225 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 DAB2P98082 770 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 FUT5Q11128 374 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MAP4K2Q12851 820 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SLAMF1Q13291 335 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 GPR50Q13585 617 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 FNDC3BQ53EP0 1204 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SYT14P1Q58G82 188 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM201Q5SNT2 666 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ATAD3CQ5T2N8 411 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 C9orf64Q5T6V5 341 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 PPP2R2DQ66LE6 453 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TMPRSS11AQ6ZMR5 421 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 USP30Q70CQ3 517 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ADCK2Q7Z695 626 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ABI3BPQ7Z7G0 1075 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 PDZD3Q86UT5 571 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 KIF18BQ86Y91 864 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MMAAQ8IVH4 418 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 UBQLNLQ8IYU4 475 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 LINC01555Q8NAE3 123 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 OR8J1Q8NGP2 316 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TM9SF4Q92544 642 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 PIK3R3Q92569 461 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 KLK6Q92876 244 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TP53INP1Q96A56 240 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 LRR1Q96L50 414 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 DHRS1Q96LJ7 313 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TEFMQ96QE5 360 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 C17orf62Q9BQA9 187 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MENTQ9BUN1 341 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MND1Q9BWT6 205 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ZCCHC2Q9C0B9 1178 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SRRQ9GZT4 340 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MIXL1Q9H2W2 232 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 DPEP2Q9H4A9 486 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 GLIPR2Q9H4G4 154 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 XKR8Q9H6D3 395 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ABCB9Q9NP78 766 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TOR4AQ9NXH8 423 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TBC1D14Q9P2M4 693 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 CRNNQ9UBG3 495 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 STUB1Q9UNE7 303 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 WBP11Q9Y2W2 641 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 RPL36Q9Y3U8 105 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 N6AMT1Q9Y5N5 214 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 KCNE3Q9Y6H6 103 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 A0A1W2PPV9 198 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 C4orf51C9J302 202 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SCAMP1O15126 338 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 NDUFS4O43181 175 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 C8orf89P0DMQ9 161 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 NR2F1P10589 423 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ADH5P11766 374 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 CCL5P13501 91 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ENDOUP21128 410 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 KELP23276 732 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 GSTM5P46439 218 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 RPS25P62851 125 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MLLT1Q03111 559 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 HNRNPA0Q13151 305 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 LARS2Q15031 903 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 NCF4Q15080 339 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ARHGAP15Q53QZ3 475 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ARMC4Q5T2S8 1044 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF793Q6ZN11 406 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TBC1D19Q8N5T2 526 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 OR4K5Q8NGD3 323 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SETD7Q8WTS6 366 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 GATAD2BQ8WXI9 593 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 UBE2E3Q969T4 207 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ZG16BQ96DA0 208 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 LRIG1Q96JA1 1093 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SLC35G5Q96KT7 338 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 LINC00615Q96LM1 132 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 TM9SF2Q99805 663 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 CCDC32Q9BV29 185 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 RACGAP1Q9H0H5 632 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms