RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 FMO6PO60774 539 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 SCGB1D2O95969 90 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 CRABP1P29762 137 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 GKP32189 559 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 CTC1Q2NKJ3 1217 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 NKAPLQ5M9Q1 402 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 OR4N4Q8N0Y3 316 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 MDGA1Q8NFP4 955 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 LRRC20Q8TCA0 184 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 HIPK2Q9H2X6 1198 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 ZFP57Q9NU63 452 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 TAS2R10Q9NYW0 307 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 KCTD3Q9Y597 815 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 SNED1Q8TER0 1413 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 UGDHO60701 494 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 PCBD1P61457 104 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 RAB11BQ15907 218 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 CARD17Q5XLA6 110 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 KLHDC8AQ8IYD2 350 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 GATSQ8NAP1 163 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 FZD3Q9NPG1 666 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 POMPQ9Y244 141 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 POU3F2P20265 443 aaPredicted RBP19.54■□□□□ 0.72
UPF1-207ENST00000599848 RPS3P23396 243 aaKnown RBP eCLIP19.54■□□□□ 0.729e-7■■■■□ 24.7
UPF1-207ENST00000599848 DGKQP52824 942 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 SRYQ05066 204 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 TMEM25Q86YD3 366 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 IGSF8Q969P0 613 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 TLCD1Q96CP7 247 aa19.54■□□□□ 0.72
UPF1-207ENST00000599848 IFNA5P01569 189 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 OR12D1P0DN82 309 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 NDUFV2P19404 249 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 CD72P21854 359 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 P2RY2P41231 377 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 GSK3BP49841 420 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 NKX3-2P78367 333 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 SHC2P98077 582 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 ZNF613Q6PF04 617 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 HTR3DQ70Z44 454 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 PCYT2Q99447 389 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 RXFP3Q9NSD7 469 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 TMLHEQ9NVH6 421 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 GMEB1Q9Y692 573 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 GK3PQ14409 553 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 GRIN2CQ14957 1233 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 LACTB2Q53H82 288 aaPredicted RBP19.53■□□□□ 0.72
UPF1-207ENST00000599848 TMEM178AQ8NBL3 297 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 FGF13Q92913 245 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 OBP2AQ9NY56 170 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 SPO11Q9Y5K1 396 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 CSN2P05814 226 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 SLC7A9P82251 487 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 MLF2Q15773 248 aaPredicted RBP19.53■□□□□ 0.72
UPF1-207ENST00000599848 SPATC1Q76KD6 591 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 ZNF610Q8N9Z0 462 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 ZNF442Q9H7R0 627 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 OR6C2Q9NZP2 312 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 SLC19A2O60779 497 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 DNAJB6O75190 326 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 TCN2P20062 427 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 DIO3P55073 304 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 RAB15P59190 212 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 MRPL21Q7Z2W9 205 aaKnown RBP19.53■□□□□ 0.72
UPF1-207ENST00000599848 TUBA1CQ9BQE3 449 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 CCDC86Q9H6F5 360 aaKnown RBP19.53■□□□□ 0.72
UPF1-207ENST00000599848 VNN3Q9NY84 501 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 GRHL1Q9NZI5 618 aa19.53■□□□□ 0.72
UPF1-207ENST00000599848 IGKV6-21A0A0C4DH24 114 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 MEGF11A6BM72 1044 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 CD36P16671 472 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 XRCC1P18887 633 aaPredicted RBP19.52■□□□□ 0.72
UPF1-207ENST00000599848 S100A10P60903 97 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 FBXL8Q96CD0 374 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 MEPEQ9NQ76 525 aaPredicted RBP19.52■□□□□ 0.72
UPF1-207ENST00000599848 C12orf4Q9NQ89 552 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 POT1Q9NUX5 634 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 TRIM64CA6NLI5 447 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 ANKRD30BLA7E2S9 258 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 PRPS1P60891 318 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 BLMHQ13867 455 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 C6orf52Q5T4I8 152 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 ERI1Q8IV48 349 aaKnown RBP19.52■□□□□ 0.72
UPF1-207ENST00000599848 OR11L1Q8NGX0 322 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 HIF3AQ9Y2N7 669 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 OR5K3A6NET4 321 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 CAV3P56539 151 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 SLC2A7Q6PXP3 512 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.52■□□□□ 0.72
UPF1-207ENST00000599848 NAXEQ8NCW5 288 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 SLC2A12Q8TD20 617 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 C10orf82Q8WW14 230 aa19.52■□□□□ 0.72
UPF1-207ENST00000599848 FBP2O00757 339 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 IFNA2P01563 188 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 CEBPBP17676 345 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 DEFB133Q30KQ1 61 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 EEF1A1P5Q5VTE0 462 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 KIAA1614Q5VZ46 1190 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 ISLR2Q6UXK2 745 aa19.52■□□□□ 0.71
UPF1-207ENST00000599848 ZNF598Q86UK7 904 aaKnown RBP19.52■□□□□ 0.71
UPF1-207ENST00000599848 ZNF584Q8IVC4 421 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms