RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PKP2Q99959 881 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 DOHHQ9BU89 302 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 BTBD2Q9BX70 525 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 OSBPL11Q9BXB4 747 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CHST8Q9H2A9 424 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 GLIPR2Q9H4G4 154 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ZNF768Q9H5H4 540 aaKnown RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 IKZF5Q9H5V7 419 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 PIF1Q9H611 641 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 GAREM1Q9H706 876 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 IL21RQ9HBE5 538 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 BCL2L10Q9HD36 194 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 CD320Q9NPF0 282 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 IL1RAPQ9NPH3 570 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 ZCCHC3Q9NUD5 404 aaKnown RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 IRAK4Q9NWZ3 460 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 UCKL1Q9NWZ5 548 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 TEX10Q9NXF1 929 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 IFT80Q9P2H3 777 aaPredicted RBP7.51□□□□□ -1.21
VPS39-213ENST00000570062 SRPK3Q9UPE1 567 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 KLHL20Q9Y2M5 609 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 NAALAD2Q9Y3Q0 740 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 SLCO1B1Q9Y6L6 691 aa7.51□□□□□ -1.21
VPS39-213ENST00000570062 LOC105369274A0A096LPK9 316 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 LOC102723532A0A0G2JNH3 316 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 A0A0G2JPF8 293 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HNRNPCL2B2RXH8 293 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HNRNPCL3B7ZW38 293 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 KHNYNO15037 678 aaKnown RBP7.5□□□□□ -1.21
VPS39-213ENST00000570062 OIP5O43482 229 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PLOD3O60568 738 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 SDC3O75056 442 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 COQ9O75208 318 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PRKD3O94806 890 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PRSS23O95084 383 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CPNE6O95741 557 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HPRP00739 348 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CST1P01037 141 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ATP1B1P05026 303 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ITGB2P05107 769 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CFIP05156 583 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 FABP3P05413 133 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 SLC35E2P0CK97 266 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HNRNPCL4P0DMR1 293 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ARAFP10398 606 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 UQCRBP14927 111 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ETS2P15036 469 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 NCK1P16333 377 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 MATN1P21941 496 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CD1CP29017 333 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 IFNA8P32881 189 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 MAGEA2P43356 314 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 LSSP48449 732 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 MVDP53602 400 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HSD17B7P56937 341 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 SMIM11AP58511 58 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PSPHP78330 225 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 BNIP3Q12983 259 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 HSPB3Q12988 150 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 GAB1Q13480 694 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ADRM1Q16186 407 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 GTDC1Q4AE62 458 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 FRMPD2BQ6IN97 320 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 IZUMO2Q6UXV1 221 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 FAM92BQ6ZTR7 304 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 KANSL1Q7Z3B3 1105 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 RNF130Q86XS8 419 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PTOV1Q86YD1 416 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 OR4N4Q8N0Y3 316 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CA13Q8N1Q1 262 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 TMEM105Q8N8V8 129 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 GALNT6Q8NCL4 622 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 OR4D9Q8NGE8 314 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 BBS10Q8TAM1 723 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ZNF675Q8TD23 568 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 NUDT8Q8WV74 236 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 NRG4Q8WWG1 115 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 OIT3Q8WWZ8 545 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 LRTOMTQ8WZ04 291 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CNRIP1Q96F85 164 aaPredicted RBP7.5□□□□□ -1.21
VPS39-213ENST00000570062 AURKBQ96GD4 344 aaPredicted RBP7.5□□□□□ -1.21
VPS39-213ENST00000570062 ZNF681Q96N22 645 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 FCRL4Q96PJ5 515 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 OR1F2PQ96R84 312 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 SEPHS2Q99611 448 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 MAPKAP1Q9BPZ7 522 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 NDC1Q9BTX1 674 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ACTRT3Q9BYD9 372 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 AICDAQ9GZX7 198 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 ARMC7Q9H6L4 198 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CXorf36Q9H7Y0 433 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 CAPN10Q9HC96 672 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 BATF3Q9NR55 127 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 SLC6A13Q9NSD5 602 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 DDX18Q9NVP1 670 aaKnown RBP7.5□□□□□ -1.21
VPS39-213ENST00000570062 PDP2Q9P2J9 529 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 GMEB2Q9UKD1 530 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 PADI2Q9Y2J8 665 aa7.5□□□□□ -1.21
VPS39-213ENST00000570062 FAM32AQ9Y421 112 aaKnown RBP7.5□□□□□ -1.21
VPS39-213ENST00000570062 MMACHCQ9Y4U1 282 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms