RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPAG16Q8N0X2 631 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SPATA6LQ8N4H0 392 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 KIF2BQ8N4N8 673 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 FAM47BQ8NA70 645 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MFSD9Q8NBP5 474 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CCDC197Q8NCU1 140 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GPRC5AQ8NFJ5 357 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 OR10A7Q8NGE5 316 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 OR13F1Q8NGS4 319 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 NFKBIDQ8NI38 313 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SUN3Q8TAQ9 357 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GLYATL2Q8WU03 294 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CHPT1Q8WUD6 406 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 BCL2L2Q92843 193 aaPredicted RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 UFD1Q92890 307 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 AP2M1Q96CW1 435 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 WDYHV1Q96HA8 205 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 BIRC8Q96P09 236 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 CASD1Q96PB1 797 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ZNF385AQ96PM9 386 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 TEAD3Q99594 435 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PRRT1Q99946 306 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 C7orf50Q9BRJ6 194 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 MRPL13Q9BYD1 178 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 POLR3FQ9H1D9 316 aaPredicted RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 SLC25A18Q9H1K4 315 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PPA2Q9H2U2 334 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SPNS1Q9H2V7 528 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 KLHL31Q9H511 634 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 FN3KRPQ9HA64 309 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SIAEQ9HAT2 523 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MMP25Q9NPA2 562 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 ZDHHC4Q9NPG8 344 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 PDGFCQ9NRA1 345 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS35-205ENST00000563984 MED17Q9NVC6 651 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SLCO1C1Q9NYB5 712 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 IGSF9Q9P2J2 1179 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 GNPTGQ9UJJ9 305 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 HSF4Q9ULV5 492 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MGAT4AQ9UM21 535 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 MAN2B2Q9Y2E5 1009 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 NDUFAF1Q9Y375 327 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 RIPK3Q9Y572 518 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 KCNE2Q9Y6J6 123 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 EIF4G3O43432 1585 aaKnown RBP4.81□□□□□ -1.64
VPS35-205ENST00000563984 ADGRL1O94910 1474 aa4.81□□□□□ -1.64
VPS35-205ENST00000563984 SYNJ1O43426 1573 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ABCC8Q09428 1581 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 A0A1B0GV90 55 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PLSCR5A0PG75 271 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ELOVL7A1L3X0 281 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 OOEPA6NGQ2 149 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 A6NIZ1 184 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ARHGEF33A8MVX0 844 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 MYO1GB0I1T2 1018 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CCDC188H7C350 402 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 KPNA4O00629 521 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 CCSO14618 274 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 DSCR3O14972 297 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PIP5K1BO14986 540 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 MID1O15344 667 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 DCXO43602 365 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLC28A2O43868 658 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CCNT2O60583 730 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 USP12O75317 370 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 TULP3O75386 442 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 MOSPD3O75425 235 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PIGRP01833 764 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CDK1P06493 297 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ENO1P06733 434 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 SRPRAP08240 638 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 SPARCP09486 303 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLC35E2BP0CK96 405 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SLC35E2P0CK97 266 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PSMC3P17980 439 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 UGT1A6P19224 532 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ITIH1P19827 911 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 NR1D1P20393 614 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CNR1P21554 472 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 CYP2F1P24903 491 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 IL12BP29460 328 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 STX2P32856 288 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 ICAM3P32942 547 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GPX4P36969 197 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 MMP13P45452 471 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RPS5P46782 204 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 TGM4P49221 684 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GMPSP49915 693 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 ST8SIA6P61647 398 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 RPL23AP62750 156 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 GNGT1P63211 74 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 GAGE1Q13065 139 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 SPP2Q13103 211 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 KRR1Q13601 381 aaKnown RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 ALCAMQ13740 583 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 KLF9Q13886 244 aaPredicted RBP4.8□□□□□ -1.64
VPS35-205ENST00000563984 HNF4GQ14541 408 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PCLAFQ15004 111 aa4.8□□□□□ -1.64
VPS35-205ENST00000563984 PDK3Q15120 406 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms