RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TATDN3Q17R31 274 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PRSS53Q2L4Q9 553 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 IER5LQ5T953 404 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PDE12Q6L8Q7 609 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF852Q6ZMS4 543 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TMPRSS11BQ86T26 416 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CFAP206Q8IYR0 622 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF557Q8N988 423 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF707Q96C28 371 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CCDC120Q96HB5 630 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 MAGEB10Q96LZ2 347 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 FERD3LQ96RJ6 166 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 HDHD5Q9BXW7 423 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 OR2AG1Q9H205 316 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SNTG1Q9NSN8 517 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 IMPAD1Q9NX62 359 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 TAS2R7Q9NYW3 318 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 CNOT2Q9NZN8 540 aaKnown RBP11.64□□□□□ -0.55
SHMT2-207ENST00000553837 PCDHB11Q9Y5F2 797 aa11.64□□□□□ -0.55
SHMT2-207ENST00000553837 SAP18O00422 153 aaKnown RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 TOR1AO14656 332 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 PROM1O43490 865 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 PI15O43692 258 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 FGF19O95750 216 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 NPPBP16860 134 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF8P17098 575 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 GABRB1P18505 474 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 MEF2AQ02078 507 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 SSX1Q16384 188 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 CPTPQ5TA50 214 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 LCN1P1Q5VSP4 162 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 SAXO2Q658L1 398 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 LAMTOR1Q6IAA8 161 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 TSEN54Q7Z6J9 526 aaKnown RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF547Q8IVP9 402 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 DACT3Q96B18 629 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 HYLS1Q96M11 299 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 FEVQ99581 238 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 ERVMER34-1Q9H9K5 563 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 BRF2Q9HAW0 419 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 GPATCH2Q9NW75 528 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 MRPL39Q9NYK5 338 aaKnown RBP11.63□□□□□ -0.55
SHMT2-207ENST00000553837 FZD4Q9ULV1 537 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 DUSP12Q9UNI6 340 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 KCNE2Q9Y6J6 123 aa11.63□□□□□ -0.55
SHMT2-207ENST00000553837 SH3D21A4FU49 640 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PRR23AA6NEV1 266 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PCP4L1A6NKN8 68 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 H3BM21 787 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SCG5P05408 212 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ADH5P11766 374 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 AQP1P29972 269 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 LBX1P52954 281 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MC1RQ01726 317 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MRPL28Q13084 256 aaKnown RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MAB21L1Q13394 359 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 TSTA3Q13630 321 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 GAB4Q2WGN9 574 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 LRRC56Q8IYG6 542 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 CPA6Q8N4T0 437 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 CAMKK1Q8N5S9 505 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 OR8H1Q8NGG4 311 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 WDR48Q8TAF3 677 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 KIAA1143Q96AT1 154 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SECISBP2Q96T21 854 aaKnown RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 TRIM45Q9H8W5 580 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SEC14L4Q9UDX3 406 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SLC23A1Q9UHI7 598 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 POFUT2Q9Y2G5 429 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF175Q9Y473 711 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PCDHGA2Q9Y5H1 932 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ALG5Q9Y673 324 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 CSNK1G3Q9Y6M4 447 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 KIAA1549LQ6ZVL6 1849 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 QSOX1O00391 747 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PLA2G10O15496 165 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SULT1B1O43704 296 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PCDH7O60245 1069 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MMP20O60882 483 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PAPLNO95428 1278 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 FGBP02675 491 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 S100A6P06703 90 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 SRPRAP08240 638 aaKnown RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 TSPAN19P0C672 248 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ANXA8P13928 327 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 HSD3B1P14060 373 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PSMA1P25786 263 aaKnown RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 HSD3B2P26439 372 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 TIA1P31483 386 aaKnown RBP eCLIP11.62□□□□□ -0.553e-16■■■□□ 15.8
SHMT2-207ENST00000553837 MVDP53602 400 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 LARS2Q15031 903 aaKnown RBP11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MPEG1Q2M385 716 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PYDC2Q56P42 97 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 COX20Q5RI15 118 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 C9orf64Q5T6V5 341 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ZBTB37Q5TC79 503 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 PLAG1Q6DJT9 500 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 MZT2BQ6NZ67 158 aa11.62□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF782Q6ZMW2 699 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms