RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 SLC35E2P0CK97 266 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 LAMP1P11279 417 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PRPS2P11908 318 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CD1EP15812 388 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PORP16435 677 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PCSK2P16519 638 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CSNK2A2P19784 350 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 IL12AP29459 219 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 NTSP30990 170 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 SOX18P35713 384 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 GSTM5P46439 218 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ASMTP46597 345 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CDK9P50750 372 aaKnown RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 NCBP2P52298 156 aaKnown RBP eCLIP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 RRADP55042 308 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 UFM1P61960 85 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 HSPB3Q12988 150 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 AIMP2Q13155 320 aaKnown RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 MAD2L1Q13257 205 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PDE7AQ13946 482 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 EXOSC7Q15024 291 aaKnown RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PLAG1Q6DJT9 500 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 OGFOD2Q6N063 350 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 PCSK4Q6UW60 755 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 LINC00696Q6ZRV3 163 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ZNF551Q7Z340 670 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 APLFQ8IW19 511 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 GALNT12Q8IXK2 581 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 KBTBD2Q8IY47 623 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CCDC116Q8IYX3 515 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 APCDD1LQ8NCL9 501 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 B3GNT7Q8NFL0 401 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 OR9I1Q8NGQ6 314 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 OR14A16Q8NHC5 309 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ACTRT2Q8TDY3 377 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 RIT1Q92963 219 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 MAGED4Q96JG8 741 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ZNF317Q96PQ6 595 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 NPAS2Q99743 824 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ARHGAP9Q9BRR9 750 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 DPY30Q9C005 99 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 GLIPR2Q9H4G4 154 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 ZBTB20Q9HC78 741 aaPredicted RBP9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 GIMAP4Q9NUV9 329 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 FAM53CQ9NYF3 392 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 MAT2BQ9NZL9 334 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 EHD3Q9NZN3 535 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 GPR45Q9Y5Y3 372 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CROCCQ5TZA2 2017 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 CPAMD8Q8IZJ3 1885 aa9.13□□□□□ -0.95
TOPBP1-209ENST00000513818 MYO1GB0I1T2 1018 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PCDH17O14917 1159 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 UBDO15205 165 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 TPD52L2O43399 206 aaKnown RBP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 ITGB2P05107 769 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SERPINA7P05543 415 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 TROVE2P10155 538 aaKnown RBP eCLIP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 LSP1P33241 339 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 MC3RP41968 323 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 DGKQP52824 942 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 CLDN8P56748 225 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 MGAT2Q10469 447 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 DUSP8Q13202 625 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 KCNAB2Q13303 367 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 LY6DQ14210 128 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 MYBPC3Q14896 1274 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 EXT1Q16394 746 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 NNATQ16517 81 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SPRED3Q2MJR0 410 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SMU1Q2TAY7 513 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PRICKLE4Q2TBC4 344 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PGS1Q32NB8 556 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 ZNF628Q5EBL2 1059 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SPANXN4Q5MJ08 99 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 OR4F3Q6IEY1 312 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PAOXQ6QHF9 649 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 TMEM107Q6UX40 140 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SPATA19Q7Z5L4 167 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 ANKRD46Q86W74 232 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 RIMKLAQ8IXN7 391 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 C9orf40Q8IXQ3 194 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 CLECL1Q8IZS7 167 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 FAM9CQ8IZT9 166 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 VWA5B2Q8N398 1253 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 EXD3Q8N9H8 876 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 CEP70Q8NHQ1 597 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 ZNF721Q8TF20 911 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PSMF1Q92530 271 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 DAZLQ92904 295 aaKnown RBP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 NACC2Q96BF6 587 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 VMP1Q96GC9 406 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 RBM18Q96H35 190 aaKnown RBP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SENP5Q96HI0 755 aaPredicted RBP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 FBXL20Q96IG2 436 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 VPS50Q96JG6 964 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 RILPQ96NA2 401 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 AMDHD1Q96NU7 426 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 GAL3ST4Q96RP7 486 aa9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 PELOQ9BRX2 385 aaKnown RBP9.12□□□□□ -0.95
TOPBP1-209ENST00000513818 SLC25A23Q9BV35 468 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms