RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC37A3Q8NCC5 494 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 VSTM2BA6NLU5 285 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 MOGSQ13724 837 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 GINS1Q14691 196 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ALG10Q5BKT4 473 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 MANEALQ5VSG8 457 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 NANOGP8Q6NSW7 305 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 HMGN2P46Q86SG4 172 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 NLGN4XQ8N0W4 816 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 APOOQ9BUR5 198 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 NANOGQ9H9S0 305 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ENY2Q9NPA8 101 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 C14orf166Q9Y224 244 aaKnown RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 EXOSC1Q9Y3B2 195 aaKnown RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ZNF701M0R085 212 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 C7P10643 843 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 RPA4Q13156 261 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 FGL2Q14314 439 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 C6orf120Q7Z4R8 191 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 SPERTQ8NA61 448 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 FGF13Q92913 245 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 PRR11Q96HE9 360 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 MS4A4AQ96JQ5 239 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 FAM129BQ96TA1 746 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ZFYVE21Q9BQ24 234 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 SCGB1D2O95969 90 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 SLC35E2BP0CK96 405 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 HTR2BP41595 481 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ECH1Q13011 328 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 GRB7Q14451 532 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 FIGNL1Q6PIW4 674 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 PAQR7Q86WK9 346 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 OR5T2Q8NGG2 359 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 OR51G2Q8NGK0 314 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 TSPEARQ8WU66 669 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 ZNF486Q96H40 463 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 BOCQ9BWV1 1114 aa12.55□□□□□ -0.4
PTPRF-215ENST00000496447 PAQR5Q9NXK6 330 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-215ENST00000496447 SLC35F4A4IF30 521 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 FAAHO00519 579 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 P2RY2P41231 377 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 HERV-K104P61576 105 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 DLX2Q07687 328 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 COL9A2Q14055 689 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ABHD17BQ5VST6 288 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 RELL1Q8IUW5 271 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 MYH2Q9UKX2 1941 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 A8MVJ9 347 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 NUAK1O60285 661 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 RPS3P23396 243 aaKnown RBP eCLIP12.54□□□□□ -0.48e-7■■□□□ 11.4
PTPRF-215ENST00000496447 MECP2P51608 486 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CES4AQ5XG92 561 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 PM20D1Q6GTS8 502 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 PYHIN1Q6K0P9 492 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SHQ1Q6PI26 577 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 OR51A7Q8NH64 312 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 GAL3ST3Q96A11 431 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 TOE1Q96GM8 510 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 HPF1Q9NWY4 346 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CNOT11Q9UKZ1 510 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ALDOAP04075 364 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 IL32P24001 234 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 NR0B2Q15466 257 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 RPL13AP3Q6NVV1 102 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 TMEM135Q86UB9 458 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 TREML1Q86YW5 311 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SNX29P2Q8IUI4 249 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ZNF440Q8IYI8 595 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 OR2T33Q8NG76 320 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 BARD1Q99728 777 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CD93Q9NPY3 652 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SLC7A11Q9UPY5 501 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SLITRK5O94991 958 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ITGB7P26010 798 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SRYQ05066 204 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SEC23BQ15437 767 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 UGT3A2Q3SY77 523 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 LARP4Q71RC2 724 aaKnown RBP eCLIP12.54□□□□□ -0.49e-10■□□□□ 10.6
PTPRF-215ENST00000496447 SCD5Q86SK9 330 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 MRPL43Q8N983 215 aaKnown RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 OR8K3Q8NH51 312 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 DOHHQ9BU89 302 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SARDHQ9UL12 918 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CDRT1O95170 752 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CPNE6O95741 557 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 S100A2P29034 98 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 FOLR3P41439 243 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 GAS6Q14393 721 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 OGFRL1Q5TC84 451 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-215ENST00000496447 MEDAGQ5VYS4 303 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 UNQ6126/PRO20091Q6UXV3 157 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 GPR137CQ8N3F9 429 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 SLC44A3Q8N4M1 653 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ACVR1CQ8NER5 493 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 CREB3L1Q96BA8 519 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 PIP5K1AQ99755 562 aa12.54□□□□□ -0.4
PTPRF-215ENST00000496447 ARFGEF2Q9Y6D5 1785 aa12.53□□□□□ -0.4
PTPRF-215ENST00000496447 TEX13DA0A0J9YY54 714 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-215ENST00000496447 PVALBP20472 110 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-215ENST00000496447 NR0B1P51843 470 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms