RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CD2APQ9Y5K6 639 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SRPRBQ9Y5M8 271 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA8CPA6NN73 597 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 TTC31Q49AM3 519 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 TRERF1Q96PN7 1200 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SRGAP2BP0DMP2 458 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 BRD2P25440 801 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ZMAT2Q96NC0 199 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 FAM50BQ9Y247 325 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ALPK2Q86TB3 2170 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MIA2Q96PC5 1412 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SLFN14P0C7P3 912 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MAP2K1Q02750 393 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SMC6Q96SB8 1091 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MKRN1Q9UHC7 482 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 RAD50Q92878 1312 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 GNAI3P08754 354 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 FOXD4L6Q3SYB3 417 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 FOXD4L3Q6VB84 417 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 NBPF11Q86T75 865 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 BICD2Q8TD16 824 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC102AQ96A19 550 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 MAGEC2Q9UBF1 373 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 EIF4G1Q04637 1599 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 MCM3P25205 808 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 EIF6P56537 245 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 NFXL1Q6ZNB6 911 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 GVINP1Q7Z2Y8 2422 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SCN5AQ14524 2016 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 MYH7BA7E2Y1 1941 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PPFIA3O75145 1194 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 HOXD10P28358 340 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 KIF4BQ2VIQ3 1234 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 KIF2AO00139 706 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 WASHC4Q2M389 1173 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 NBPF20Q3BBV1 942 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC181Q5TID7 509 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 ZGPATQ8N5A5 531 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC148Q8NFR7 591 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 DNAAF4Q8WXU2 420 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 FMNL2Q96PY5 1086 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 ARHGEF17Q96PE2 2063 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PFDN6O15212 129 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PHACTR2O75167 634 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 S100BP04271 92 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 KHDRBS2Q5VWX1 349 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 OXCT2Q9BYC2 517 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 LMCD1Q9NZU5 365 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 KCNG1Q9UIX4 513 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 USH1CQ9Y6N9 552 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PLEKHG3A1L390 1219 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 CEP164Q9UPV0 1460 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 GOLIM4O00461 696 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 BAG3O95817 575 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 MSL1Q68DK7 614 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PCM1Q15154 2024 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.19□□□□□ -1.98e-7■■■■□ 21.2
SCN1A-219ENST00000641575 PPP4R4Q6NUP7 873 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 RPGRQ92834 1020 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 EDARQ9UNE0 448 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SPG7Q9UQ90 795 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SFSWAPQ12872 951 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SH2D4BQ5SQS7 431 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 ANKLE2Q86XL3 938 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SCAPERQ9BY12 1400 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 ZFYP08048 801 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 KRT83P78385 493 aa3.19□□□□□ -1.9
SCN1A-219ENST00000641575 SDCCAG8Q86SQ7 713 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 CRACR2BQ8N4Y2 399 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 RPRD1BQ9NQG5 326 aaKnown RBP3.19□□□□□ -1.9
SCN1A-219ENST00000641575 NUP205Q92621 2012 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PCNX2A6NKB5 2137 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 KIF28PB7ZC32 967 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 VPS36Q86VN1 386 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 L3MBTL3Q96JM7 780 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 HINFPQ9BQA5 517 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 TEX13AQ9BXU3 409 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PALMDQ9NP74 551 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 COL6A6A6NMZ7 2263 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC160A6NGH7 325 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 IVLP07476 585 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 KRT10P13645 584 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 SPOUT1Q5T280 376 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 MORC1Q86VD1 984 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 LRRC27Q9C0I9 530 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC7Q96M83 1385 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PKDREJQ9NTG1 2253 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 HLA-DOAP06340 250 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PRR29P0C7W0 189 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CALM1P0DP23 149 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CALM2P0DP24 149 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CALM3P0DP25 149 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 LRCH2Q5VUJ6 765 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 WDR63Q8IWG1 891 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PSPC1Q8WXF1 523 aaKnown RBP3.18□□□□□ -1.9
SCN1A-219ENST00000641575 CEP83Q9Y592 693 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 PSMA3P25788 255 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 HSPA4P34932 840 aa3.18□□□□□ -1.9
SCN1A-219ENST00000641575 ZBTB17Q13105 803 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms