RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 ATP10DQ9P241 1426 aa10.74□□□□□ -0.69
NEK3-209ENST00000618856 SERPINB2P05120 415 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 KCNA3P22001 575 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 HLFQ16534 295 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 PROSER3Q2NL68 480 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 DUSP27Q5VZP5 1158 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 TTLL7Q6ZT98 887 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 C8orf58Q8NAV2 365 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 MAP3K15Q6ZN16 1313 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 CARMIL3Q8ND23 1372 aa10.73□□□□□ -0.69
NEK3-209ENST00000618856 BRCA1P38398 1863 aaKnown RBP10.72□□□□□ -0.69
NEK3-209ENST00000618856 MIER1Q8N108 512 aa10.72□□□□□ -0.69
NEK3-209ENST00000618856 SPINK5Q9NQ38 1064 aaPredicted RBP10.72□□□□□ -0.69
NEK3-209ENST00000618856 DBF4Q9UBU7 674 aaPredicted RBP10.72□□□□□ -0.69
NEK3-209ENST00000618856 MYL6BP14649 208 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 EIF2S2P20042 333 aaKnown RBP10.71□□□□□ -0.69
NEK3-209ENST00000618856 NUP98P52948 1817 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 HDGFL1Q5TGJ6 251 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 PRR5LQ6MZQ0 368 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 GIGYF2Q6Y7W6 1299 aaKnown RBP10.71□□□□□ -0.69
NEK3-209ENST00000618856 NPM2Q86SE8 214 aaKnown RBP10.71□□□□□ -0.69
NEK3-209ENST00000618856 ZNF34Q8IZ26 560 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 TSPYL6Q8N831 410 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 TSR2Q969E8 191 aaKnown RBP10.71□□□□□ -0.69
NEK3-209ENST00000618856 FANCIQ9NVI1 1328 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 CHPF2Q9P2E5 772 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 ZNF652Q9Y2D9 606 aa10.71□□□□□ -0.69
NEK3-209ENST00000618856 ZNF330Q9Y3S2 320 aaPredicted RBP10.71□□□□□ -0.69
NEK3-209ENST00000618856 ANKRD31Q8N7Z5 1873 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 DLEC1Q9Y238 1755 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 IBTKQ9P2D0 1353 aaPredicted RBP10.7□□□□□ -0.7
NEK3-209ENST00000618856 SENP3-EIF4A1A0A087X0R7 540 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 KLRG2A4D1S0 409 aaPredicted RBP10.7□□□□□ -0.7
NEK3-209ENST00000618856 ANXA1P04083 346 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 YBX3P16989 372 aaKnown RBP eCLIP10.7□□□□□ -0.7
NEK3-209ENST00000618856 SETDB2Q96T68 719 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 BRIP1Q9BX63 1249 aa10.7□□□□□ -0.7
NEK3-209ENST00000618856 N4BP2Q86UW6 1770 aaPredicted RBP10.7□□□□□ -0.7
NEK3-209ENST00000618856 RIC1Q4ADV7 1423 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 UBN2Q6ZU65 1347 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 DPEP1P16444 411 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 KIF6Q6ZMV9 814 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 COPS6Q7L5N1 327 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 KLHL34Q8N239 644 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 CHMP4AQ9BY43 222 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 HYPKQ9NX55 129 aa10.69□□□□□ -0.7
NEK3-209ENST00000618856 A0A0G2JLW4 131 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 VAMP4O75379 141 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 BICDL1Q6ZP65 573 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 TRMT2AQ8IZ69 625 aaKnown RBP10.68□□□□□ -0.7
NEK3-209ENST00000618856 XAGE3Q8WTP9 111 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 ZBTB3Q9H5J0 574 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 PDZRN3Q9UPQ7 1066 aa10.68□□□□□ -0.7
NEK3-209ENST00000618856 NIP7Q9Y221 180 aaKnown RBP eCLIP10.68□□□□□ -0.7
NEK3-209ENST00000618856 ANKRD36CQ5JPF3 1778 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 ELL2O00472 640 aaPredicted RBP10.67□□□□□ -0.7
NEK3-209ENST00000618856 GRIN3BO60391 1043 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 GOLGA2Q08379 1002 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 TWISTNBQ3B726 338 aaPredicted RBP10.67□□□□□ -0.7
NEK3-209ENST00000618856 CCDC30Q5VVM6 783 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 TPTE2Q6XPS3 522 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 CNBD1Q8NA66 436 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 PLBD2Q8NHP8 589 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 NECTIN2Q92692 538 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 MYH16Q9H6N6 1097 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 SALL2Q9Y467 1007 aaPredicted RBP10.67□□□□□ -0.7
NEK3-209ENST00000618856 ARFGEF1Q9Y6D6 1849 aa10.67□□□□□ -0.7
NEK3-209ENST00000618856 COL11A2P13942 1736 aaPredicted RBP10.67□□□□□ -0.7
NEK3-209ENST00000618856 RNF123Q5XPI4 1314 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 NTSR2O95665 410 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 CHRNA5P30532 468 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 SLFN5Q08AF3 891 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 TRIM28Q13263 835 aaKnown RBP10.66□□□□□ -0.7
NEK3-209ENST00000618856 TCIRG1Q13488 830 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 GPR162Q16538 588 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 PARP10Q53GL7 1025 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 HSP90AB3PQ58FF7 597 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 ANKRD13DQ6ZTN6 518 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 ISCA1Q9BUE6 129 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 PIM2Q9P1W9 311 aa10.66□□□□□ -0.7
NEK3-209ENST00000618856 E9PSI1 815 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 NPM3O75607 178 aaKnown RBP10.65□□□□□ -0.7
NEK3-209ENST00000618856 SRGNP10124 158 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 PDE6BP35913 854 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 EXOSC9Q06265 439 aaKnown RBP10.65□□□□□ -0.7
NEK3-209ENST00000618856 CRY2Q49AN0 593 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 SLC10A5Q5PT55 438 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 SUSD4Q5VX71 490 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 NLRP10Q86W26 655 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 NBPF5PQ86XG9 351 aaPredicted RBP10.65□□□□□ -0.7
NEK3-209ENST00000618856 NYXQ9GZU5 481 aa10.65□□□□□ -0.7
NEK3-209ENST00000618856 PHAXQ9H814 394 aaKnown RBP10.65□□□□□ -0.7
NEK3-209ENST00000618856 ARFGEF2Q9Y6D5 1785 aa10.65□□□□□ -0.71
NEK3-209ENST00000618856 TNRC6CQ9HCJ0 1690 aaKnown RBP10.64□□□□□ -0.71
NEK3-209ENST00000618856 ST5P78524 1137 aa10.64□□□□□ -0.71
NEK3-209ENST00000618856 AIMP1Q12904 312 aaKnown RBP10.64□□□□□ -0.71
NEK3-209ENST00000618856 C2CD5Q86YS7 1000 aa10.64□□□□□ -0.71
NEK3-209ENST00000618856 ABCC12Q96J65 1359 aa10.64□□□□□ -0.71
NEK3-209ENST00000618856 CACNA1FO60840 1977 aa10.63□□□□□ -0.71
NEK3-209ENST00000618856 CHD4Q14839 1912 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms