RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 N4BP2Q86UW6 1770 aaPredicted RBP17.12■□□□□ 0.33
VMP1-217ENST00000593168 KIF13BQ9NQT8 1826 aa17.12■□□□□ 0.33
VMP1-217ENST00000593168 EIF2S2P20042 333 aaKnown RBP17.11■□□□□ 0.33
VMP1-217ENST00000593168 SSFA2P28290 1259 aa17.11■□□□□ 0.33
VMP1-217ENST00000593168 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
VMP1-217ENST00000593168 KIF3CO14782 793 aa17.1■□□□□ 0.33
VMP1-217ENST00000593168 SIK1P57059 783 aa17.1■□□□□ 0.33
VMP1-217ENST00000593168 MVPQ14764 893 aaKnown RBP17.1■□□□□ 0.33
VMP1-217ENST00000593168 DBF4Q9UBU7 674 aaPredicted RBP17.1■□□□□ 0.33
VMP1-217ENST00000593168 ITPK1Q13572 414 aa17.09■□□□□ 0.33
VMP1-217ENST00000593168 ABCC4O15439 1325 aa17.09■□□□□ 0.33
VMP1-217ENST00000593168 UBR2Q8IWV8 1755 aa17.08■□□□□ 0.33
VMP1-217ENST00000593168 G2E3Q7L622 706 aa17.08■□□□□ 0.32
VMP1-217ENST00000593168 TMEM57Q8N5G2 664 aa17.08■□□□□ 0.32
VMP1-217ENST00000593168 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
VMP1-217ENST00000593168 ASAP1Q9ULH1 1129 aa17.08■□□□□ 0.32
VMP1-217ENST00000593168 PXDNLA1KZ92 1463 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 PRAMEF22A3QJZ6 481 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 FLIIQ13045 1269 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 VSIG10Q8N0Z9 540 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 CCDC136Q96JN2 1154 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 ATG3Q9NT62 314 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 CHPF2Q9P2E5 772 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 DDX19BQ9UMR2 479 aa17.07■□□□□ 0.32
VMP1-217ENST00000593168 KCPQ6ZWJ8 1503 aa17.06■□□□□ 0.32
VMP1-217ENST00000593168 GNPATO15228 680 aa17.06■□□□□ 0.32
VMP1-217ENST00000593168 INTS3Q68E01 1043 aaKnown RBP17.06■□□□□ 0.32
VMP1-217ENST00000593168 B4GALNT3Q6L9W6 998 aa17.06■□□□□ 0.32
VMP1-217ENST00000593168 CHMP4BQ9H444 224 aaKnown RBP17.06■□□□□ 0.32
VMP1-217ENST00000593168 DDX21Q9NR30 783 aaKnown RBP eCLIP17.06■□□□□ 0.32
VMP1-217ENST00000593168 ERBB4Q15303 1308 aa17.05■□□□□ 0.32
VMP1-217ENST00000593168 ATP6V1AP38606 617 aa17.05■□□□□ 0.32
VMP1-217ENST00000593168 HYPKQ9NX55 129 aa17.05■□□□□ 0.32
VMP1-217ENST00000593168 USP16Q9Y5T5 823 aa17.05■□□□□ 0.32
VMP1-217ENST00000593168 COL5A3P25940 1745 aaPredicted RBP17.04■□□□□ 0.32
VMP1-217ENST00000593168 BRCA1P38398 1863 aaKnown RBP17.04■□□□□ 0.32
VMP1-217ENST00000593168 MMP10P09238 476 aa17.04■□□□□ 0.32
VMP1-217ENST00000593168 ITPRIPQ8IWB1 547 aa17.04■□□□□ 0.32
VMP1-217ENST00000593168 TEX13AQ9BXU3 409 aaPredicted RBP17.04■□□□□ 0.32
VMP1-217ENST00000593168 PTCD1O75127 700 aaKnown RBP17.03■□□□□ 0.32
VMP1-217ENST00000593168 FKBP5Q13451 457 aaPredicted RBP17.03■□□□□ 0.32
VMP1-217ENST00000593168 PDIA6Q15084 440 aa17.03■□□□□ 0.32
VMP1-217ENST00000593168 PHAXQ9H814 394 aaKnown RBP17.03■□□□□ 0.32
VMP1-217ENST00000593168 ZNF831Q5JPB2 1677 aa17.03■□□□□ 0.32
VMP1-217ENST00000593168 C4AP0C0L4 1744 aa17.02■□□□□ 0.32
VMP1-217ENST00000593168 A0A0G2JLW4 131 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 ZBTB7BO15156 539 aaPredicted RBP17.01■□□□□ 0.31
VMP1-217ENST00000593168 CCT4P50991 539 aaKnown RBP17.01■□□□□ 0.31
VMP1-217ENST00000593168 PROSER3Q2NL68 480 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 SLC4A9Q96Q91 983 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 ZBTB40Q9NUA8 1239 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 LAMB4A4D0S4 1761 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 C10orf71Q711Q0 1435 aa17.01■□□□□ 0.31
VMP1-217ENST00000593168 ANXA1P04083 346 aa17■□□□□ 0.31
VMP1-217ENST00000593168 BCS1LQ9Y276 419 aa17■□□□□ 0.31
VMP1-217ENST00000593168 MYH14Q7Z406 1995 aaKnown RBP16.99■□□□□ 0.31
VMP1-217ENST00000593168 ARFGEF1Q9Y6D6 1849 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 APLP1P51693 650 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 TGFB2P61812 414 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 TRAPPC3LQ5T215 181 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 LRP10Q7Z4F1 713 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 WDR90Q96KV7 1748 aa16.99■□□□□ 0.31
VMP1-217ENST00000593168 F6X3S4 739 aa16.98■□□□□ 0.31
VMP1-217ENST00000593168 DDX58O95786 925 aaKnown RBP16.98■□□□□ 0.31
VMP1-217ENST00000593168 KSR2Q6VAB6 950 aa16.98■□□□□ 0.31
VMP1-217ENST00000593168 RBM42Q9BTD8 480 aaKnown RBP16.98■□□□□ 0.31
VMP1-217ENST00000593168 RTCBQ9Y3I0 505 aaKnown RBP16.98■□□□□ 0.31
VMP1-217ENST00000593168 PI4KAP2A4QPH2 592 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 TOMM70O94826 608 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 STARD3NLO95772 234 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 DPEP1P16444 411 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 SLC4A10Q6U841 1118 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 ARHGAP27Q6ZUM4 889 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 DNAJC10Q8IXB1 793 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 NLGN1Q8N2Q7 840 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 DNAJC5GQ8N7S2 189 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 PI4KAP1Q8N8J0 262 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 DNAAF4Q8WXU2 420 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 ARHGEF1Q92888 912 aaKnown RBP16.97■□□□□ 0.31
VMP1-217ENST00000593168 NMRK2Q9NPI5 230 aa16.97■□□□□ 0.31
VMP1-217ENST00000593168 GYS1P13807 737 aa16.96■□□□□ 0.31
VMP1-217ENST00000593168 MYL6BP14649 208 aa16.96■□□□□ 0.31
VMP1-217ENST00000593168 PCDHB15Q9Y5E8 787 aa16.96■□□□□ 0.31
VMP1-217ENST00000593168 NBPF26B4DH59 902 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 A1BGP04217 495 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 RC3H1Q5TC82 1133 aaKnown RBP16.95■□□□□ 0.3
VMP1-217ENST00000593168 NBPF10Q6P3W6 841 aaKnown RBP16.95■□□□□ 0.3
VMP1-217ENST00000593168 COPS6Q7L5N1 327 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 NBPF15Q8N660 670 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 XAGE3Q8WTP9 111 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 CCDC87Q9NVE4 849 aa16.95■□□□□ 0.3
VMP1-217ENST00000593168 KCNA3P22001 575 aa16.94■□□□□ 0.3
VMP1-217ENST00000593168 KDM2BQ8NHM5 1336 aa16.94■□□□□ 0.3
VMP1-217ENST00000593168 CNTNAP4Q9C0A0 1308 aa16.94■□□□□ 0.3
VMP1-217ENST00000593168 RPS6KA4O75676 772 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 CYP19A1P11511 503 aaPredicted RBP16.93■□□□□ 0.3
VMP1-217ENST00000593168 ADRA2BP18089 450 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 BEND3Q5T5X7 828 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 ANKRD13DQ6ZTN6 518 aa16.93■□□□□ 0.3
VMP1-217ENST00000593168 CENPQQ7L2Z9 268 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms