RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 PROSER3Q2NL68 480 aa20.47■□□□□ 0.87
LIG3-215ENST00000592690 TTLL7Q6ZT98 887 aa20.47■□□□□ 0.87
LIG3-215ENST00000592690 CACNA1SQ13698 1873 aa20.47■□□□□ 0.87
LIG3-215ENST00000592690 ANXA1P04083 346 aa20.46■□□□□ 0.87
LIG3-215ENST00000592690 HLFQ16534 295 aa20.46■□□□□ 0.87
LIG3-215ENST00000592690 CCDC27Q2M243 656 aa20.46■□□□□ 0.87
LIG3-215ENST00000592690 LRP10Q7Z4F1 713 aa20.46■□□□□ 0.87
LIG3-215ENST00000592690 KCNA3P22001 575 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 YY1P25490 414 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 CHRNA5P30532 468 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 CLEC4GQ6UXB4 293 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 WWC1Q8IX03 1113 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 SETDB2Q96T68 719 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 ZNF652Q9Y2D9 606 aa20.45■□□□□ 0.86
LIG3-215ENST00000592690 MAP3K15Q6ZN16 1313 aa20.44■□□□□ 0.86
LIG3-215ENST00000592690 RGL2O15211 777 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 GRIN3BO60391 1043 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 DUSP27Q5VZP5 1158 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 PRR5LQ6MZQ0 368 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 KIF6Q6ZMV9 814 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 CCDC24Q8N4L8 307 aa20.43■□□□□ 0.86
LIG3-215ENST00000592690 SALL2Q9Y467 1007 aaPredicted RBP20.43■□□□□ 0.86
LIG3-215ENST00000592690 HOXB7P09629 217 aa20.42■□□□□ 0.86
LIG3-215ENST00000592690 HDGFL1Q5TGJ6 251 aa20.42■□□□□ 0.86
LIG3-215ENST00000592690 ZBTB3Q9H5J0 574 aa20.42■□□□□ 0.86
LIG3-215ENST00000592690 NIP7Q9Y221 180 aaKnown RBP eCLIP20.42■□□□□ 0.86
LIG3-215ENST00000592690 BCS1LQ9Y276 419 aa20.42■□□□□ 0.86
LIG3-215ENST00000592690 ERVV-1B6SEH8 477 aa20.41■□□□□ 0.86
LIG3-215ENST00000592690 NCBP3Q53F19 620 aaKnown RBP20.41■□□□□ 0.86
LIG3-215ENST00000592690 CNBD1Q8NA66 436 aa20.41■□□□□ 0.86
LIG3-215ENST00000592690 CHPF2Q9P2E5 772 aa20.41■□□□□ 0.86
LIG3-215ENST00000592690 TSR2Q969E8 191 aaKnown RBP20.4■□□□□ 0.86
LIG3-215ENST00000592690 TNRC6CQ9HCJ0 1690 aaKnown RBP20.4■□□□□ 0.86
LIG3-215ENST00000592690 DDX21Q9NR30 783 aaKnown RBP eCLIP20.4■□□□□ 0.86
LIG3-215ENST00000592690 ATP10DQ9P241 1426 aa20.4■□□□□ 0.86
LIG3-215ENST00000592690 ARFGEF2Q9Y6D5 1785 aa20.4■□□□□ 0.86
LIG3-215ENST00000592690 ELL2O00472 640 aaPredicted RBP20.39■□□□□ 0.85
LIG3-215ENST00000592690 NBPF5PQ86XG9 351 aaPredicted RBP20.39■□□□□ 0.85
LIG3-215ENST00000592690 C8orf58Q8NAV2 365 aa20.39■□□□□ 0.85
LIG3-215ENST00000592690 PIM2Q9P1W9 311 aa20.39■□□□□ 0.85
LIG3-215ENST00000592690 FAM177BA6PVY3 158 aa20.38■□□□□ 0.85
LIG3-215ENST00000592690 NPHP1O15259 732 aa20.38■□□□□ 0.85
LIG3-215ENST00000592690 COPS6Q7L5N1 327 aa20.38■□□□□ 0.85
LIG3-215ENST00000592690 C2CD5Q86YS7 1000 aa20.38■□□□□ 0.85
LIG3-215ENST00000592690 XAGE3Q8WTP9 111 aa20.38■□□□□ 0.85
LIG3-215ENST00000592690 IL16Q14005 1332 aa20.37■□□□□ 0.85
LIG3-215ENST00000592690 UBN2Q6ZU65 1347 aa20.37■□□□□ 0.85
LIG3-215ENST00000592690 AIMP1Q12904 312 aaKnown RBP20.37■□□□□ 0.85
LIG3-215ENST00000592690 BRIP1Q9BX63 1249 aa20.37■□□□□ 0.85
LIG3-215ENST00000592690 GPTP24298 496 aa20.36■□□□□ 0.85
LIG3-215ENST00000592690 ST5P78524 1137 aa20.36■□□□□ 0.85
LIG3-215ENST00000592690 DALRD3Q5D0E6 543 aaKnown RBP20.36■□□□□ 0.85
LIG3-215ENST00000592690 GIGYF2Q6Y7W6 1299 aaKnown RBP20.36■□□□□ 0.85
LIG3-215ENST00000592690 TSPYL6Q8N831 410 aa20.36■□□□□ 0.85
LIG3-215ENST00000592690 DBF4Q9UBU7 674 aaPredicted RBP20.36■□□□□ 0.85
LIG3-215ENST00000592690 SBF1O95248 1867 aa20.36■□□□□ 0.85
LIG3-215ENST00000592690 SLX4Q8IY92 1834 aa20.35■□□□□ 0.85
LIG3-215ENST00000592690 H0YIN7 160 aa20.35■□□□□ 0.85
LIG3-215ENST00000592690 CCDC88AQ3V6T2 1871 aa20.35■□□□□ 0.85
LIG3-215ENST00000592690 PDE6BP35913 854 aa20.34■□□□□ 0.85
LIG3-215ENST00000592690 ZNF34Q8IZ26 560 aa20.34■□□□□ 0.85
LIG3-215ENST00000592690 CACNA1FO60840 1977 aa20.34■□□□□ 0.85
LIG3-215ENST00000592690 LAMB2P55268 1798 aa20.34■□□□□ 0.85
LIG3-215ENST00000592690 ABCC12Q96J65 1359 aa20.34■□□□□ 0.85
LIG3-215ENST00000592690 FANCIQ9NVI1 1328 aa20.33■□□□□ 0.85
LIG3-215ENST00000592690 CCER2I3L3R5 266 aa20.33■□□□□ 0.85
LIG3-215ENST00000592690 TPTE2Q6XPS3 522 aa20.33■□□□□ 0.85
LIG3-215ENST00000592690 WDR63Q8IWG1 891 aa20.33■□□□□ 0.85
LIG3-215ENST00000592690 IBTKQ9P2D0 1353 aaPredicted RBP20.33■□□□□ 0.84
LIG3-215ENST00000592690 SUSD4Q5VX71 490 aa20.31■□□□□ 0.84
LIG3-215ENST00000592690 ARHGAP27Q6ZUM4 889 aa20.31■□□□□ 0.84
LIG3-215ENST00000592690 NUTM1Q86Y26 1132 aa20.31■□□□□ 0.84
LIG3-215ENST00000592690 SPINK5Q9NQ38 1064 aaPredicted RBP20.31■□□□□ 0.84
LIG3-215ENST00000592690 HYPKQ9NX55 129 aa20.31■□□□□ 0.84
LIG3-215ENST00000592690 FER1L6Q2WGJ9 1857 aa20.3■□□□□ 0.84
LIG3-215ENST00000592690 ERFEQ4G0M1 354 aa20.3■□□□□ 0.84
LIG3-215ENST00000592690 TTLL6Q8N841 843 aa20.3■□□□□ 0.84
LIG3-215ENST00000592690 ZNF622Q969S3 477 aaKnown RBP eCLIP20.3■□□□□ 0.84
LIG3-215ENST00000592690 NYXQ9GZU5 481 aa20.3■□□□□ 0.84
LIG3-215ENST00000592690 PDZRN3Q9UPQ7 1066 aa20.3■□□□□ 0.84
LIG3-215ENST00000592690 NTSR2O95665 410 aa20.29■□□□□ 0.84
LIG3-215ENST00000592690 SRGNP10124 158 aa20.29■□□□□ 0.84
LIG3-215ENST00000592690 GTF2E1P29083 439 aaPredicted RBP20.29■□□□□ 0.84
LIG3-215ENST00000592690 TWISTNBQ3B726 338 aaPredicted RBP20.29■□□□□ 0.84
LIG3-215ENST00000592690 DIEXFQ68CQ4 756 aaKnown RBP20.29■□□□□ 0.84
LIG3-215ENST00000592690 PLBD2Q8NHP8 589 aa20.29■□□□□ 0.84
LIG3-215ENST00000592690 PHAXQ9H814 394 aaKnown RBP20.29■□□□□ 0.84
LIG3-215ENST00000592690 ZNF521Q96K83 1311 aa20.28■□□□□ 0.84
LIG3-215ENST00000592690 DDX60Q8IY21 1712 aaKnown RBP20.28■□□□□ 0.84
LIG3-215ENST00000592690 TCIRG1Q13488 830 aa20.28■□□□□ 0.84
LIG3-215ENST00000592690 CCDC30Q5VVM6 783 aa20.28■□□□□ 0.84
LIG3-215ENST00000592690 ANKRD13DQ6ZTN6 518 aa20.28■□□□□ 0.84
LIG3-215ENST00000592690 ZNF784Q8NCA9 323 aaPredicted RBP20.28■□□□□ 0.84
LIG3-215ENST00000592690 ADCY9O60503 1353 aa20.28■□□□□ 0.84
LIG3-215ENST00000592690 RIC1Q4ADV7 1423 aa20.27■□□□□ 0.84
LIG3-215ENST00000592690 KLRG2A4D1S0 409 aaPredicted RBP20.27■□□□□ 0.84
LIG3-215ENST00000592690 TCERG1O14776 1098 aaKnown RBP20.27■□□□□ 0.84
LIG3-215ENST00000592690 PARP10Q53GL7 1025 aa20.27■□□□□ 0.84
LIG3-215ENST00000592690 HSP90AB3PQ58FF7 597 aa20.27■□□□□ 0.84
LIG3-215ENST00000592690 EXOSC9Q06265 439 aaKnown RBP20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms