RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ERVV-1B6SEH8 477 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 LRP10Q7Z4F1 713 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 NECTIN2Q92692 538 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 SETDB2Q96T68 719 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 DBF4Q9UBU7 674 aaPredicted RBP15.4■□□□□ 0.06
LIG3-213ENST00000590630 CACNA1FO60840 1977 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 MAP3K15Q6ZN16 1313 aa15.4■□□□□ 0.06
LIG3-213ENST00000590630 N4BP2Q86UW6 1770 aaPredicted RBP15.39■□□□□ 0.05
LIG3-213ENST00000590630 PROSER3Q2NL68 480 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 BICDL1Q6ZP65 573 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 C8orf58Q8NAV2 365 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 CHPF2Q9P2E5 772 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 BRCA1P38398 1863 aaKnown RBP15.39■□□□□ 0.05
LIG3-213ENST00000590630 ZNF521Q96K83 1311 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 FANCIQ9NVI1 1328 aa15.39■□□□□ 0.05
LIG3-213ENST00000590630 ELL2O00472 640 aaPredicted RBP15.38■□□□□ 0.05
LIG3-213ENST00000590630 SERPINB2P05120 415 aa15.38■□□□□ 0.05
LIG3-213ENST00000590630 TGFB2P61812 414 aa15.38■□□□□ 0.05
LIG3-213ENST00000590630 TTLL7Q6ZT98 887 aa15.38■□□□□ 0.05
LIG3-213ENST00000590630 ANKRD36CQ5JPF3 1778 aa15.38■□□□□ 0.05
LIG3-213ENST00000590630 PXDNLA1KZ92 1463 aa15.38■□□□□ 0.05
LIG3-213ENST00000590630 ATP10DQ9P241 1426 aa15.37■□□□□ 0.05
LIG3-213ENST00000590630 ANXA1P04083 346 aa15.37■□□□□ 0.05
LIG3-213ENST00000590630 MYH16Q9H6N6 1097 aa15.37■□□□□ 0.05
LIG3-213ENST00000590630 HYPKQ9NX55 129 aa15.37■□□□□ 0.05
LIG3-213ENST00000590630 ANKRD31Q8N7Z5 1873 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 GOLGA2Q08379 1002 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 HLFQ16534 295 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 CCDC30Q5VVM6 783 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 COPS6Q7L5N1 327 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 TSPYL6Q8N831 410 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 ZBTB3Q9H5J0 574 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 NIP7Q9Y221 180 aaKnown RBP eCLIP15.36■□□□□ 0.05
LIG3-213ENST00000590630 DLEC1Q9Y238 1755 aa15.36■□□□□ 0.05
LIG3-213ENST00000590630 TWISTNBQ3B726 338 aaPredicted RBP15.35■□□□□ 0.05
LIG3-213ENST00000590630 GIGYF2Q6Y7W6 1299 aaKnown RBP15.35■□□□□ 0.05
LIG3-213ENST00000590630 CNBD1Q8NA66 436 aa15.35■□□□□ 0.05
LIG3-213ENST00000590630 XAGE3Q8WTP9 111 aa15.35■□□□□ 0.05
LIG3-213ENST00000590630 CHD4Q14839 1912 aa15.35■□□□□ 0.05
LIG3-213ENST00000590630 ARFGEF2Q9Y6D5 1785 aa15.34■□□□□ 0.05
LIG3-213ENST00000590630 AIMP1Q12904 312 aaKnown RBP15.34■□□□□ 0.05
LIG3-213ENST00000590630 GPR162Q16538 588 aa15.34■□□□□ 0.05
LIG3-213ENST00000590630 NBPF5PQ86XG9 351 aaPredicted RBP15.34■□□□□ 0.05
LIG3-213ENST00000590630 SPINK5Q9NQ38 1064 aaPredicted RBP15.34■□□□□ 0.05
LIG3-213ENST00000590630 NPHP1O15259 732 aa15.33■□□□□ 0.04
LIG3-213ENST00000590630 PRR5LQ6MZQ0 368 aa15.33■□□□□ 0.04
LIG3-213ENST00000590630 ARFGEF1Q9Y6D6 1849 aa15.33■□□□□ 0.04
LIG3-213ENST00000590630 A0A0G2JLW4 131 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 DPEP1P16444 411 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 ST5P78524 1137 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 HSP90AB3PQ58FF7 597 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 TPTE2Q6XPS3 522 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 PELP1Q8IZL8 1130 aaKnown RBP15.32■□□□□ 0.04
LIG3-213ENST00000590630 PLBD2Q8NHP8 589 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 BRIP1Q9BX63 1249 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 STK31Q9BXU1 1019 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 NYXQ9GZU5 481 aa15.32■□□□□ 0.04
LIG3-213ENST00000590630 IBTKQ9P2D0 1353 aaPredicted RBP15.32■□□□□ 0.04
LIG3-213ENST00000590630 E9PSI1 815 aa15.31■□□□□ 0.04
LIG3-213ENST00000590630 EXOSC9Q06265 439 aaKnown RBP15.31■□□□□ 0.04
LIG3-213ENST00000590630 PARP10Q53GL7 1025 aa15.31■□□□□ 0.04
LIG3-213ENST00000590630 ANKRD13DQ6ZTN6 518 aa15.31■□□□□ 0.04
LIG3-213ENST00000590630 ZNF34Q8IZ26 560 aa15.31■□□□□ 0.04
LIG3-213ENST00000590630 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
LIG3-213ENST00000590630 COL11A2P13942 1736 aaPredicted RBP15.31■□□□□ 0.04
LIG3-213ENST00000590630 GRIN3BO60391 1043 aa15.3■□□□□ 0.04
LIG3-213ENST00000590630 YBX3P16989 372 aaKnown RBP eCLIP15.3■□□□□ 0.04
LIG3-213ENST00000590630 KCNA3P22001 575 aa15.3■□□□□ 0.04
LIG3-213ENST00000590630 GPTP24298 496 aa15.3■□□□□ 0.04
LIG3-213ENST00000590630 PDE6BP35913 854 aa15.3■□□□□ 0.04
LIG3-213ENST00000590630 UBN2Q6ZU65 1347 aa15.3■□□□□ 0.04
LIG3-213ENST00000590630 VAMP4O75379 141 aa15.29■□□□□ 0.04
LIG3-213ENST00000590630 TCIRG1Q13488 830 aa15.29■□□□□ 0.04
LIG3-213ENST00000590630 PHAXQ9H814 394 aaKnown RBP15.29■□□□□ 0.04
LIG3-213ENST00000590630 PIM2Q9P1W9 311 aa15.29■□□□□ 0.04
LIG3-213ENST00000590630 H0YIN7 160 aa15.28■□□□□ 0.04
LIG3-213ENST00000590630 DDX58O95786 925 aaKnown RBP15.28■□□□□ 0.04
LIG3-213ENST00000590630 GTF2E1P29083 439 aaPredicted RBP15.28■□□□□ 0.04
LIG3-213ENST00000590630 CHRNA5P30532 468 aa15.28■□□□□ 0.04
LIG3-213ENST00000590630 SLFN5Q08AF3 891 aa15.28■□□□□ 0.04
LIG3-213ENST00000590630 PPP1R42Q7Z4L9 355 aa15.28■□□□□ 0.04
LIG3-213ENST00000590630 RIC1Q4ADV7 1423 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 RNF123Q5XPI4 1314 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 FAM177BA6PVY3 158 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 SLC4A2P04920 1241 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 SUSD4Q5VX71 490 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 RIC3Q7Z5B4 369 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 C2CD5Q86YS7 1000 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 CCDC24Q8N4L8 307 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 WWC3Q9ULE0 1092 aa15.27■□□□□ 0.04
LIG3-213ENST00000590630 CACNA1SQ13698 1873 aa15.27■□□□□ 0.03
LIG3-213ENST00000590630 TNRC6CQ9HCJ0 1690 aaKnown RBP15.26■□□□□ 0.03
LIG3-213ENST00000590630 NTSR2O95665 410 aa15.26■□□□□ 0.03
LIG3-213ENST00000590630 DALRD3Q5D0E6 543 aaKnown RBP15.26■□□□□ 0.03
LIG3-213ENST00000590630 NLRP10Q86W26 655 aa15.26■□□□□ 0.03
LIG3-213ENST00000590630 UTP14AQ9BVJ6 771 aaKnown RBP15.26■□□□□ 0.03
LIG3-213ENST00000590630 BCS1LQ9Y276 419 aa15.26■□□□□ 0.03
LIG3-213ENST00000590630 KLRG2A4D1S0 409 aaPredicted RBP15.25■□□□□ 0.03
LIG3-213ENST00000590630 TCERG1O14776 1098 aaKnown RBP15.25■□□□□ 0.03
LIG3-213ENST00000590630 NUTM1Q86Y26 1132 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms