RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 HMX1Q9NP08 348 aaPredicted RBP8.35□□□□□ -1.07
PTPRM-213ENST00000580949 PPIP5K1Q6PFW1 1433 aa8.35□□□□□ -1.07
PTPRM-213ENST00000580949 ATP7BP35670 1465 aa8.34□□□□□ -1.07
PTPRM-213ENST00000580949 WNT7BP56706 349 aa8.34□□□□□ -1.07
PTPRM-213ENST00000580949 NR6A1Q15406 480 aa8.34□□□□□ -1.07
PTPRM-213ENST00000580949 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.34□□□□□ -1.07
PTPRM-213ENST00000580949 SNRKQ9NRH2 765 aa8.34□□□□□ -1.07
PTPRM-213ENST00000580949 ADAMTS8Q9UP79 889 aa8.34□□□□□ -1.07
PTPRM-213ENST00000580949 XRN1Q8IZH2 1706 aaKnown RBP8.34□□□□□ -1.07
PTPRM-213ENST00000580949 APBB1O00213 710 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 ADGRB2O60241 1585 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 MTHFSP49914 203 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 ZNF697Q5TEC3 545 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 MTMR14Q8NCE2 650 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 GJD4Q96KN9 370 aaPredicted RBP8.33□□□□□ -1.08
PTPRM-213ENST00000580949 TRIM34Q9BYJ4 488 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 NSD2O96028 1365 aa8.33□□□□□ -1.08
PTPRM-213ENST00000580949 USP32Q8NFA0 1604 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 ACEP12821 1306 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 ZBED9Q6R2W3 1325 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 C14orf37Q86TY3 774 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 NME9Q86XW9 330 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 PNMA1Q8ND90 353 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 BAP1Q92560 729 aa8.32□□□□□ -1.08
PTPRM-213ENST00000580949 GPKOWQ92917 476 aaPredicted RBP eCLIP8.32□□□□□ -1.08
PTPRM-213ENST00000580949 ZC3H4Q9UPT8 1303 aaKnown RBP8.31□□□□□ -1.08
PTPRM-213ENST00000580949 FBLN1P23142 703 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 SKOR1P84550 965 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 FLIIQ13045 1269 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 MCM6Q14566 821 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 NBPF14Q5TI25 921 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 ZNF511Q8NB15 262 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 EPS8L1Q8TE68 723 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 FKBPLQ9UIM3 349 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 POLR3AO14802 1390 aaPredicted RBP8.31□□□□□ -1.08
PTPRM-213ENST00000580949 INSRP06213 1382 aa8.31□□□□□ -1.08
PTPRM-213ENST00000580949 TTC21BQ7Z4L5 1316 aa8.3□□□□□ -1.08
PTPRM-213ENST00000580949 EDC4Q6P2E9 1401 aaKnown RBP8.3□□□□□ -1.08
PTPRM-213ENST00000580949 SH3BP2P78314 561 aa8.3□□□□□ -1.08
PTPRM-213ENST00000580949 PROSER2Q86WR7 435 aaPredicted RBP8.3□□□□□ -1.08
PTPRM-213ENST00000580949 PMFBP1Q8TBY8 1022 aa8.3□□□□□ -1.08
PTPRM-213ENST00000580949 NKTRP30414 1462 aaKnown RBP8.3□□□□□ -1.08
PTPRM-213ENST00000580949 CDC42BPGQ6DT37 1551 aa8.3□□□□□ -1.08
PTPRM-213ENST00000580949 BLMP54132 1417 aaPredicted RBP8.29□□□□□ -1.08
PTPRM-213ENST00000580949 SSH2Q76I76 1423 aa8.29□□□□□ -1.08
PTPRM-213ENST00000580949 CHD2O14647 1828 aaKnown RBP8.29□□□□□ -1.08
PTPRM-213ENST00000580949 WDR43Q15061 677 aaKnown RBP eCLIP8.29□□□□□ -1.08
PTPRM-213ENST00000580949 LINC01559Q495D7 138 aa8.29□□□□□ -1.08
PTPRM-213ENST00000580949 POLKQ9UBT6 870 aa8.29□□□□□ -1.08
PTPRM-213ENST00000580949 LMTK3Q96Q04 1460 aa8.29□□□□□ -1.08
PTPRM-213ENST00000580949 ANKARQ7Z5J8 1434 aa8.29□□□□□ -1.08
PTPRM-213ENST00000580949 WNT7AO00755 349 aa8.28□□□□□ -1.08
PTPRM-213ENST00000580949 CCDC146Q8IYE0 955 aa8.28□□□□□ -1.08
PTPRM-213ENST00000580949 NDUFB9Q9Y6M9 179 aa8.28□□□□□ -1.08
PTPRM-213ENST00000580949 USP6P35125 1406 aa8.28□□□□□ -1.08
PTPRM-213ENST00000580949 ADGRL3Q9HAR2 1447 aa8.28□□□□□ -1.08
PTPRM-213ENST00000580949 GDF9O60383 454 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRR20EP86478 221 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRR20CP86479 221 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRR20DP86480 221 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRR20BP86481 221 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRR20AP86496 221 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 RC3H1Q5TC82 1133 aaKnown RBP8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PDXDC2PQ6P474 469 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 NGDNQ8NEJ9 315 aaKnown RBP8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PRM3Q9NNZ6 103 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PKD2L1Q9P0L9 805 aa8.27□□□□□ -1.09
PTPRM-213ENST00000580949 PNPLA6Q8IY17 1366 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 TRIM67Q6ZTA4 783 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 SH3BP5LQ7L8J4 393 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 BPHLQ86WA6 291 aaPredicted RBP8.26□□□□□ -1.09
PTPRM-213ENST00000580949 COG3Q96JB2 828 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 CFAP53Q96M91 514 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 GPSM3Q9Y4H4 160 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 TOPAZ1Q8N9V7 1692 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 NWD1Q149M9 1564 aa8.26□□□□□ -1.09
PTPRM-213ENST00000580949 COL3A1P02461 1466 aaPredicted RBP8.26□□□□□ -1.09
PTPRM-213ENST00000580949 TMEM94Q12767 1356 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 APAF1O14727 1248 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 FOXC1Q12948 553 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 SH3RF1Q7Z6J0 888 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 EHBP1Q8NDI1 1231 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 FOXJ1Q92949 421 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 ORAI2Q96SN7 254 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 C19orf44Q9H6X5 657 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 EMILIN1Q9Y6C2 1016 aa8.25□□□□□ -1.09
PTPRM-213ENST00000580949 SMG6Q86US8 1419 aaKnown RBP8.25□□□□□ -1.09
PTPRM-213ENST00000580949 AATKQ6ZMQ8 1374 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 NALCNQ8IZF0 1738 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 FMN2Q9NZ56 1722 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 VARSP26640 1264 aaKnown RBP8.24□□□□□ -1.09
PTPRM-213ENST00000580949 PTK2Q05397 1052 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 RRS1Q15050 365 aaKnown RBP8.24□□□□□ -1.09
PTPRM-213ENST00000580949 ESCO1Q5FWF5 840 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 HOMEZQ8IX15 550 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 MRGPRX2Q96LB1 330 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 SUPT16HQ9Y5B9 1047 aaKnown RBP8.24□□□□□ -1.09
PTPRM-213ENST00000580949 TTC21AQ8NDW8 1320 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 ZNF521Q96K83 1311 aa8.24□□□□□ -1.09
PTPRM-213ENST00000580949 USP31Q70CQ4 1352 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms