RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 EIF4A1P60842 406 aaKnown RBP19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 ST5P78524 1137 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 LMOD3Q0VAK6 560 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 SOGA3Q5TF21 947 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 BICDL1Q6ZP65 573 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 CNKSR1Q969H4 720 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 CCDC88AQ3V6T2 1871 aa19.13■□□□□ 0.65
SMARCE1-216ENST00000580419 COL11A2P13942 1736 aaPredicted RBP19.12■□□□□ 0.65
SMARCE1-216ENST00000580419 PRAMEF22A3QJZ6 481 aa19.12■□□□□ 0.65
SMARCE1-216ENST00000580419 SRGNP10124 158 aa19.12■□□□□ 0.65
SMARCE1-216ENST00000580419 RNF181Q9P0P0 153 aa19.12■□□□□ 0.65
SMARCE1-216ENST00000580419 ZNF330Q9Y3S2 320 aaPredicted RBP19.12■□□□□ 0.65
SMARCE1-216ENST00000580419 TPTE2Q6XPS3 522 aa19.11■□□□□ 0.65
SMARCE1-216ENST00000580419 RBM46Q8TBY0 533 aaKnown RBP19.11■□□□□ 0.65
SMARCE1-216ENST00000580419 ZNF526Q8TF50 670 aaPredicted RBP19.11■□□□□ 0.65
SMARCE1-216ENST00000580419 NUP98P52948 1817 aa19.11■□□□□ 0.65
SMARCE1-216ENST00000580419 IBTKQ9P2D0 1353 aaPredicted RBP19.1■□□□□ 0.65
SMARCE1-216ENST00000580419 MASTLQ96GX5 879 aa19.1■□□□□ 0.65
SMARCE1-216ENST00000580419 RIC1Q4ADV7 1423 aa19.09■□□□□ 0.65
SMARCE1-216ENST00000580419 NBPF5PQ86XG9 351 aaPredicted RBP19.09■□□□□ 0.65
SMARCE1-216ENST00000580419 NFKBIEO00221 500 aa19.08■□□□□ 0.64
SMARCE1-216ENST00000580419 TMPOP42166 694 aaKnown RBP19.08■□□□□ 0.64
SMARCE1-216ENST00000580419 FSTL1Q12841 308 aa19.08■□□□□ 0.64
SMARCE1-216ENST00000580419 SLX4Q8IY92 1834 aa19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 RIPK4P57078 832 aa19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 DDX10Q13206 875 aaKnown RBP19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 NYXQ9GZU5 481 aa19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 MIS18AQ9NYP9 233 aa19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 NIP7Q9Y221 180 aaKnown RBP eCLIP19.07■□□□□ 0.64
SMARCE1-216ENST00000580419 MAP3K15Q6ZN16 1313 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 GLTPD2A6NH11 291 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 NPHP1O15259 732 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 NPR1P16066 1061 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 C7orf43Q8WVR3 580 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 ZNF622Q969S3 477 aaKnown RBP eCLIP19.06■□□□□ 0.648e-14■■■□□ 17.5
SMARCE1-216ENST00000580419 NMRK2Q9NPI5 230 aa19.06■□□□□ 0.64
SMARCE1-216ENST00000580419 APLP1P51693 650 aa19.05■□□□□ 0.64
SMARCE1-216ENST00000580419 TIAM2Q8IVF5 1701 aa19.05■□□□□ 0.64
SMARCE1-216ENST00000580419 PIP4K2AP48426 406 aaPredicted RBP19.04■□□□□ 0.64
SMARCE1-216ENST00000580419 PRELPP51888 382 aa19.04■□□□□ 0.64
SMARCE1-216ENST00000580419 CRY2Q49AN0 593 aa19.04■□□□□ 0.64
SMARCE1-216ENST00000580419 PRPF40BQ6NWY9 871 aaKnown RBP19.04■□□□□ 0.64
SMARCE1-216ENST00000580419 TSPYL4Q9UJ04 414 aa19.04■□□□□ 0.64
SMARCE1-216ENST00000580419 RASSF7Q02833 373 aa19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 KIF6Q6ZMV9 814 aa19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 LRP10Q7Z4F1 713 aa19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 C16orf71Q8IYS4 520 aaPredicted RBP19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 RUNDC1Q96C34 613 aa19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 PRKRIP1Q9H875 184 aaPredicted RBP19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 WDR90Q96KV7 1748 aa19.03■□□□□ 0.64
SMARCE1-216ENST00000580419 VEGFAP15692 232 aaPredicted RBP19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 ALDH1B1P30837 517 aa19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 HLFQ16534 295 aa19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 GRIPAP1Q4V328 841 aa19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 DPY19L2Q6NUT2 758 aa19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 GIGYF2Q6Y7W6 1299 aaKnown RBP19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 THUMPD2Q9BTF0 503 aaKnown RBP19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 TAOK3Q9H2K8 898 aa19.02■□□□□ 0.64
SMARCE1-216ENST00000580419 RNF123Q5XPI4 1314 aa19.01■□□□□ 0.63
SMARCE1-216ENST00000580419 CACNA1SQ13698 1873 aa19.01■□□□□ 0.63
SMARCE1-216ENST00000580419 CHL1O00533 1208 aa19.01■□□□□ 0.63
SMARCE1-216ENST00000580419 C21orf2O43822 256 aa19.01■□□□□ 0.63
SMARCE1-216ENST00000580419 HOXB7P09629 217 aa19.01■□□□□ 0.63
SMARCE1-216ENST00000580419 WDR43Q15061 677 aaKnown RBP eCLIP19■□□□□ 0.63
SMARCE1-216ENST00000580419 PARP10Q53GL7 1025 aa19■□□□□ 0.63
SMARCE1-216ENST00000580419 CC2D2BQ6DHV5 1058 aa19■□□□□ 0.63
SMARCE1-216ENST00000580419 ZNF34Q8IZ26 560 aa19■□□□□ 0.63
SMARCE1-216ENST00000580419 HOXA10P31260 410 aaPredicted RBP18.99■□□□□ 0.63
SMARCE1-216ENST00000580419 PDIA6Q15084 440 aa18.99■□□□□ 0.63
SMARCE1-216ENST00000580419 CCDC93Q567U6 631 aa18.99■□□□□ 0.63
SMARCE1-216ENST00000580419 RTKN2Q8IZC4 609 aa18.99■□□□□ 0.63
SMARCE1-216ENST00000580419 RRP7AQ9Y3A4 280 aaKnown RBP18.99■□□□□ 0.63
SMARCE1-216ENST00000580419 ERFEQ4G0M1 354 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 TTLL7Q6ZT98 887 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 CCDC24Q8N4L8 307 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 SMC1BQ8NDV3 1235 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 RRAGCQ9HB90 399 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 TRIM35Q9UPQ4 493 aa18.98■□□□□ 0.63
SMARCE1-216ENST00000580419 GTF2E1P29083 439 aaPredicted RBP18.97■□□□□ 0.63
SMARCE1-216ENST00000580419 SCN4AP35499 1836 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 FKBP4Q02790 459 aaKnown RBP eCLIP18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 HSP90AB3PQ58FF7 597 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 SLC10A5Q5PT55 438 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 PPP1R42Q7Z4L9 355 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 DDX21Q9NR30 783 aaKnown RBP eCLIP18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 ADAMTS8Q9UP79 889 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 SNED1Q8TER0 1413 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 ANKRD36CQ5JPF3 1778 aa18.96■□□□□ 0.63
SMARCE1-216ENST00000580419 MYL6BP14649 208 aa18.95■□□□□ 0.62
SMARCE1-216ENST00000580419 DNAJC5GQ8N7S2 189 aa18.95■□□□□ 0.62
SMARCE1-216ENST00000580419 CFAP44Q96MT7 982 aa18.95■□□□□ 0.62
SMARCE1-216ENST00000580419 PSMD1Q99460 953 aa18.95■□□□□ 0.62
SMARCE1-216ENST00000580419 UBN2Q6ZU65 1347 aa18.95■□□□□ 0.62
SMARCE1-216ENST00000580419 NTSR2O95665 410 aa18.94■□□□□ 0.62
SMARCE1-216ENST00000580419 L3MBTL3Q96JM7 780 aaPredicted RBP18.94■□□□□ 0.62
SMARCE1-216ENST00000580419 CRAMP1Q96RY5 1269 aa18.94■□□□□ 0.62
SMARCE1-216ENST00000580419 POTECB2RU33 542 aa18.93■□□□□ 0.62
SMARCE1-216ENST00000580419 CALD1Q05682 793 aaKnown RBP18.93■□□□□ 0.62
SMARCE1-216ENST00000580419 ABCC12Q96J65 1359 aa18.93■□□□□ 0.62
SMARCE1-216ENST00000580419 ZEB1P37275 1124 aaPredicted RBP18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms