RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GAS6Q14393 721 aa10.21□□□□□ -0.77
NUP88-213ENST00000576862 RTN1Q16799 776 aa10.21□□□□□ -0.77
NUP88-213ENST00000576862 RNFT1Q5M7Z0 435 aa10.21□□□□□ -0.77
NUP88-213ENST00000576862 COL26A1Q96A83 441 aa10.21□□□□□ -0.77
NUP88-213ENST00000576862 LRRC69Q6ZNQ3 347 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 ZNF280CQ8ND82 737 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 VTI1AQ96AJ9 217 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 MYO19Q96H55 970 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 HSH2DQ96JZ2 352 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 HCN2Q9UL51 889 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 LRFN2Q9ULH4 789 aa10.2□□□□□ -0.78
NUP88-213ENST00000576862 BNIP3LO60238 219 aa10.19□□□□□ -0.78
NUP88-213ENST00000576862 SUSD3Q96L08 255 aa10.19□□□□□ -0.78
NUP88-213ENST00000576862 COL25A1Q9BXS0 654 aaPredicted RBP10.19□□□□□ -0.78
NUP88-213ENST00000576862 SAP130Q9H0E3 1048 aa10.19□□□□□ -0.78
NUP88-213ENST00000576862 BCS1LQ9Y276 419 aa10.19□□□□□ -0.78
NUP88-213ENST00000576862 COX20Q5RI15 118 aa10.18□□□□□ -0.78
NUP88-213ENST00000576862 SAMD5Q5TGI4 173 aa10.18□□□□□ -0.78
NUP88-213ENST00000576862 PCDHGC4Q9Y5F7 938 aa10.18□□□□□ -0.78
NUP88-213ENST00000576862 ATXN7O15265 892 aaPredicted RBP10.17□□□□□ -0.78
NUP88-213ENST00000576862 PTCD1O75127 700 aaKnown RBP10.17□□□□□ -0.78
NUP88-213ENST00000576862 NAA30Q147X3 362 aaPredicted RBP10.17□□□□□ -0.78
NUP88-213ENST00000576862 FOXR1Q6PIV2 292 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 FIGNL1Q6PIW4 674 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 ABHD17AQ96GS6 310 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 CFHR5Q9BXR6 569 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.17□□□□□ -0.78
NUP88-213ENST00000576862 KLK14Q9P0G3 267 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 SEPT3Q9UH03 358 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 GJA3Q9Y6H8 435 aa10.17□□□□□ -0.78
NUP88-213ENST00000576862 TRERF1Q96PN7 1200 aa10.16□□□□□ -0.78
NUP88-213ENST00000576862 WIPF1O43516 503 aa10.15□□□□□ -0.78
NUP88-213ENST00000576862 TNP2Q05952 138 aa10.15□□□□□ -0.78
NUP88-213ENST00000576862 DGKZQ13574 1117 aa10.15□□□□□ -0.78
NUP88-213ENST00000576862 NEUROD4Q9HD90 331 aa10.15□□□□□ -0.78
NUP88-213ENST00000576862 ANKIB1Q9P2G1 1089 aa10.15□□□□□ -0.78
NUP88-213ENST00000576862 ATXN7L1Q9ULK2 861 aaPredicted RBP10.15□□□□□ -0.78
NUP88-213ENST00000576862 DCDC2BA2VCK2 349 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 EFSO43281 561 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 FAM157BP0CG42 384 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 MAPTP10636 758 aaKnown RBP10.14□□□□□ -0.79
NUP88-213ENST00000576862 C11orf91Q3C1V1 193 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 C16orf46Q6P387 395 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 CNTNAP3BQ96NU0 1288 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 CNTNAP3Q9BZ76 1288 aa10.14□□□□□ -0.79
NUP88-213ENST00000576862 DMGDHQ9UI17 866 aaKnown RBP10.14□□□□□ -0.79
NUP88-213ENST00000576862 TNFRSF10BO14763 440 aa10.13□□□□□ -0.79
NUP88-213ENST00000576862 FAM26DQ5JW98 314 aa10.13□□□□□ -0.79
NUP88-213ENST00000576862 STRN4Q9NRL3 753 aa10.13□□□□□ -0.79
NUP88-213ENST00000576862 TGFBR3LH3BV60 316 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 KHNYNO15037 678 aaKnown RBP10.12□□□□□ -0.79
NUP88-213ENST00000576862 TYRO3Q06418 890 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 PDE4CQ08493 712 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 HIF1AQ16665 826 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 IER5Q5VY09 327 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 BTLAQ7Z6A9 289 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 MBIPQ9NS73 344 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 PHF24Q9UPV7 400 aa10.12□□□□□ -0.79
NUP88-213ENST00000576862 FGFR3P22607 806 aa10.11□□□□□ -0.79
NUP88-213ENST00000576862 CTBSQ01459 385 aa10.11□□□□□ -0.79
NUP88-213ENST00000576862 C2CD2LO14523 706 aa10.1□□□□□ -0.79
NUP88-213ENST00000576862 IFT43Q96FT9 208 aa10.1□□□□□ -0.79
NUP88-213ENST00000576862 CEP63Q96MT8 703 aa10.1□□□□□ -0.79
NUP88-213ENST00000576862 MX2P20592 715 aa10.09□□□□□ -0.79
NUP88-213ENST00000576862 SFSWAPQ12872 951 aaKnown RBP10.09□□□□□ -0.79
NUP88-213ENST00000576862 GRIN2CQ14957 1233 aa10.09□□□□□ -0.79
NUP88-213ENST00000576862 B4GALNT3Q6L9W6 998 aa10.09□□□□□ -0.79
NUP88-213ENST00000576862 ETFBKMTQ8IXQ9 262 aa10.09□□□□□ -0.79
NUP88-213ENST00000576862 BRD7Q9NPI1 651 aa10.09□□□□□ -0.79
NUP88-213ENST00000576862 CD33P20138 364 aa10.08□□□□□ -0.8
NUP88-213ENST00000576862 LORP23490 312 aaPredicted RBP10.08□□□□□ -0.8
NUP88-213ENST00000576862 GRNP28799 593 aaKnown RBP10.08□□□□□ -0.8
NUP88-213ENST00000576862 SRSF11Q05519 484 aaKnown RBP10.08□□□□□ -0.8
NUP88-213ENST00000576862 LAMC2Q13753 1193 aa10.08□□□□□ -0.8
NUP88-213ENST00000576862 GTF3C2Q8WUA4 911 aaPredicted RBP10.08□□□□□ -0.8
NUP88-213ENST00000576862 DNMT3AQ9Y6K1 912 aaPredicted RBP10.08□□□□□ -0.8
NUP88-213ENST00000576862 IGF1RP08069 1367 aa10.08□□□□□ -0.8
NUP88-213ENST00000576862 MICAL2O94851 1124 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 SLURP2P0DP57 97 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 INPP5BP32019 993 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 KCNQ4P56696 695 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 FAM182BQ5T319 152 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 TREML1Q86YW5 311 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 HELQQ8TDG4 1101 aa10.07□□□□□ -0.8
NUP88-213ENST00000576862 OPLAHO14841 1288 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 ADAMTS2O95450 1211 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 BRD2P25440 801 aaKnown RBP10.06□□□□□ -0.8
NUP88-213ENST00000576862 IDH3AP50213 366 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 TXNDC2Q86VQ3 553 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 TRAIPQ9BWF2 469 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 MARK1Q9P0L2 795 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 STIM2Q9P246 746 aa10.06□□□□□ -0.8
NUP88-213ENST00000576862 ZBTB39O15060 712 aa10.05□□□□□ -0.8
NUP88-213ENST00000576862 MTMR3Q13615 1198 aa10.05□□□□□ -0.8
NUP88-213ENST00000576862 BRD1O95696 1058 aa10.04□□□□□ -0.8
NUP88-213ENST00000576862 BMP4P12644 408 aa10.04□□□□□ -0.8
NUP88-213ENST00000576862 ARID4AP29374 1257 aaPredicted RBP10.04□□□□□ -0.8
NUP88-213ENST00000576862 KCNH4Q9UQ05 1017 aa10.04□□□□□ -0.8
NUP88-213ENST00000576862 MAP2K3P46734 347 aa10.03□□□□□ -0.8
NUP88-213ENST00000576862 SERPINB4P48594 390 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms