RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-208ENST00000570874 FBXO9Q9UK97 447 aaPredicted RBP4.46□□□□□ -1.7
SMG6-208ENST00000570874 FRMD4BQ9Y2L6 1034 aa4.46□□□□□ -1.7
SMG6-208ENST00000570874 BLMP54132 1417 aaPredicted RBP4.46□□□□□ -1.7
SMG6-208ENST00000570874 EVC2Q86UK5 1308 aa4.46□□□□□ -1.7
SMG6-208ENST00000570874 PRR36Q9H6K5 1346 aa4.46□□□□□ -1.7
SMG6-208ENST00000570874 USP54Q70EL1 1684 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 ANKRD36BQ8N2N9 1353 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 ABCC11Q96J66 1382 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 STK10O94804 968 aaKnown RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 BDNFP23560 247 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 ERCC5P28715 1186 aaPredicted RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 SRPK2P78362 688 aaKnown RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 XPCQ01831 940 aaPredicted RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 HDAC1Q13547 482 aaPredicted RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 CSPP1Q1MSJ5 1256 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 CDCA8Q53HL2 280 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 C11orf96Q7Z7L8 435 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 NLRP13Q86W25 1043 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 NPAS4Q8IUM7 802 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.45□□□□□ -1.7
SMG6-208ENST00000570874 HELBQ8NG08 1087 aaPredicted RBP4.45□□□□□ -1.7
SMG6-208ENST00000570874 CCDC102AQ96A19 550 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 CDK19Q9BWU1 502 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 GABBR1Q9UBS5 961 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 KNSTRNQ9Y448 316 aa4.45□□□□□ -1.7
SMG6-208ENST00000570874 NWD1Q149M9 1564 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 COL3A1P02461 1466 aaPredicted RBP4.44□□□□□ -1.7
SMG6-208ENST00000570874 TRPM3Q9HCF6 1732 aaPredicted RBP4.44□□□□□ -1.7
SMG6-208ENST00000570874 NPC1L1Q9UHC9 1359 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 NUTM2FA1L443 756 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 RECKO95980 971 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 PYGBP11216 843 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 RFX1P22670 979 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 TNNT2P45379 298 aaPredicted RBP4.44□□□□□ -1.7
SMG6-208ENST00000570874 GYS2P54840 703 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 MARSP56192 900 aaKnown RBP4.44□□□□□ -1.7
SMG6-208ENST00000570874 BIRC2Q13490 618 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 ZKSCAN2Q63HK3 967 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 ADGRD1Q6QNK2 874 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 MKL1Q969V6 931 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 TRIM34Q9BYJ4 488 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 TANGO6Q9C0B7 1094 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 ARHGEF10LQ9HCE6 1279 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 FEZ2Q9UHY8 353 aaPredicted RBP4.44□□□□□ -1.7
SMG6-208ENST00000570874 AXIN2Q9Y2T1 843 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 FAM135BQ49AJ0 1406 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 PPIP5K1Q6PFW1 1433 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 ZBED9Q6R2W3 1325 aa4.44□□□□□ -1.7
SMG6-208ENST00000570874 RGPD1P0DJD0 1748 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 CRYBG1Q9Y4K1 1723 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 ATAD2Q6PL18 1390 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 SOX12O15370 315 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 HOXA2O43364 376 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 FBLN1P23142 703 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 RHBDL3P58872 404 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 PPP4CP60510 307 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 POU5F1Q01860 360 aaKnown RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 MAP2K5Q13163 448 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 TTLL12Q14166 644 aaPredicted RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 ARSIQ5FYB1 569 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 RNF187Q5TA31 235 aaPredicted RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 PCGF5Q86SE9 256 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 SNRNP27Q8WVK2 155 aaKnown RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 KCTD12Q96CX2 325 aaKnown RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 RBM33Q96EV2 1170 aaKnown RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 RPS6KC1Q96S38 1066 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 TMX4Q9H1E5 349 aaPredicted RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 GGNBP2Q9H3C7 697 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 CABP1Q9NZU7 370 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 TPX2Q9ULW0 747 aaKnown RBP4.43□□□□□ -1.7
SMG6-208ENST00000570874 TBX22Q9Y458 520 aa4.43□□□□□ -1.7
SMG6-208ENST00000570874 TMEM88BA6NKF7 163 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 WASLO00401 505 aaPredicted RBP4.42□□□□□ -1.7
SMG6-208ENST00000570874 POLD1P28340 1107 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 GTF2E1P29083 439 aaPredicted RBP4.42□□□□□ -1.7
SMG6-208ENST00000570874 TBX4P57082 545 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 CPSF1Q10570 1443 aaKnown RBP4.42□□□□□ -1.7
SMG6-208ENST00000570874 PTCH1Q13635 1447 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 TRAF7Q6Q0C0 670 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 ARMCX6Q7L4S7 300 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 MSL3Q8N5Y2 521 aaKnown RBP4.42□□□□□ -1.7
SMG6-208ENST00000570874 BANK1Q8NDB2 785 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 ADAMTS8Q9UP79 889 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 SH3BP1Q9Y3L3 701 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 SUPT16HQ9Y5B9 1047 aaKnown RBP4.42□□□□□ -1.7
SMG6-208ENST00000570874 EID1Q9Y6B2 187 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 IQSEC2Q5JU85 1478 aa4.42□□□□□ -1.7
SMG6-208ENST00000570874 ALS2Q96Q42 1657 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 LRRC7Q96NW7 1537 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 NPHP4O75161 1426 aaPredicted RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 CCDC189A1A4V9 331 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 CFAP69A5D8W1 941 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 FYB1O15117 783 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 DHX16O60231 1041 aaKnown RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 KCNA6P17658 529 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 MLLT3P42568 568 aaPredicted RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 HDGFP51858 240 aaKnown RBP4.41□□□□□ -1.7
SMG6-208ENST00000570874 LMOD3Q0VAK6 560 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 PLEKHG6Q3KR16 790 aa4.41□□□□□ -1.7
SMG6-208ENST00000570874 CCDC144BQ3MJ40 725 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms