RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 GNAI1P63096 354 aa8.32□□□□□ -1.08
VPS53-209ENST00000570771 KIF12Q96FN5 646 aa8.32□□□□□ -1.08
VPS53-209ENST00000570771 PNPLA7Q6ZV29 1317 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 CASZ1Q86V15 1759 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 PSDA5PKW4 1024 aaPredicted RBP8.31□□□□□ -1.08
VPS53-209ENST00000570771 BAG6P46379 1132 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 FMNL2Q96PY5 1086 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 BABAM1Q9NWV8 329 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 TNNQ9UQP3 1299 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 TRPC6Q9Y210 931 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 C4AP0C0L4 1744 aa8.31□□□□□ -1.08
VPS53-209ENST00000570771 SOS1Q07889 1333 aaPredicted RBP8.3□□□□□ -1.08
VPS53-209ENST00000570771 UBR3Q6ZT12 1888 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 SEC24BO95487 1268 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 G2E3Q7L622 706 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 TTC5Q8N0Z6 440 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 SLAIN1Q8ND83 568 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 SMARCC1Q92922 1105 aaPredicted RBP8.3□□□□□ -1.08
VPS53-209ENST00000570771 BCL2L12Q9HB09 334 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 CHPF2Q9P2E5 772 aa8.3□□□□□ -1.08
VPS53-209ENST00000570771 SRP68Q9UHB9 627 aaKnown RBP8.3□□□□□ -1.08
VPS53-209ENST00000570771 CNTNAP4Q9C0A0 1308 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 GNPATO15228 680 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 VAMP4O75379 141 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 PHF14O94880 888 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 SNRPA1P09661 255 aaKnown RBP8.29□□□□□ -1.08
VPS53-209ENST00000570771 CT47B1P0C2W7 299 aaPredicted RBP8.29□□□□□ -1.08
VPS53-209ENST00000570771 EIF2S2P20042 333 aaKnown RBP8.29□□□□□ -1.08
VPS53-209ENST00000570771 R3HDM1Q15032 1099 aaKnown RBP8.29□□□□□ -1.08
VPS53-209ENST00000570771 SLC27A3Q5K4L6 730 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 TTLL7Q6ZT98 887 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 VSIG10Q8N0Z9 540 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 ZNF428Q96B54 188 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 BCL2L13Q9BXK5 485 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 TMEM121BQ9BXQ6 578 aaPredicted RBP8.29□□□□□ -1.08
VPS53-209ENST00000570771 CHMP4AQ9BY43 222 aa8.29□□□□□ -1.08
VPS53-209ENST00000570771 SCN7AQ01118 1682 aa8.28□□□□□ -1.08
VPS53-209ENST00000570771 CANXP27824 592 aaKnown RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 SLC15A2Q16348 729 aa8.28□□□□□ -1.08
VPS53-209ENST00000570771 TWISTNBQ3B726 338 aaPredicted RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 COL23A1Q86Y22 540 aaPredicted RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 CCDC125Q86Z20 511 aa8.28□□□□□ -1.08
VPS53-209ENST00000570771 TSPYL2Q9H2G4 693 aaPredicted RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 PHAXQ9H814 394 aaKnown RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 CCDC87Q9NVE4 849 aa8.28□□□□□ -1.08
VPS53-209ENST00000570771 GOLGB1Q14789 3259 aaKnown RBP8.28□□□□□ -1.08
VPS53-209ENST00000570771 KAT6BQ8WYB5 2073 aa8.28□□□□□ -1.08
VPS53-209ENST00000570771 COL15A1P39059 1388 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.27□□□□□ -1.09
VPS53-209ENST00000570771 MYL6BP14649 208 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 EIF5P55010 431 aaKnown RBP8.27□□□□□ -1.09
VPS53-209ENST00000570771 SF3B2Q13435 895 aaKnown RBP8.27□□□□□ -1.09
VPS53-209ENST00000570771 IER5LQ5T953 404 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 HDGFL1Q5TGJ6 251 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 MSL1Q68DK7 614 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 SSH1Q8WYL5 1049 aa8.27□□□□□ -1.09
VPS53-209ENST00000570771 ADCY9O60503 1353 aa8.26□□□□□ -1.09
VPS53-209ENST00000570771 BCORQ6W2J9 1755 aa8.26□□□□□ -1.09
VPS53-209ENST00000570771 CAMTA2O94983 1202 aa8.26□□□□□ -1.09
VPS53-209ENST00000570771 HLFQ16534 295 aa8.26□□□□□ -1.09
VPS53-209ENST00000570771 ARHGEF1Q92888 912 aaKnown RBP8.26□□□□□ -1.09
VPS53-209ENST00000570771 TTLL13PA6NNM8 815 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 RPS6KA4O75676 772 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 BCAR3O75815 825 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 RARSP54136 660 aaKnown RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 FKBP8Q14318 412 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 RC3H1Q5TC82 1133 aaKnown RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 SLC51AQ86UW1 340 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 MRPL50Q8N5N7 158 aaKnown RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 XAGE3Q8WTP9 111 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 AK7Q96M32 723 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 RCAN3Q9UKA8 241 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 TBC1D2BQ9UPU7 963 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 ZNF330Q9Y3S2 320 aaPredicted RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 QSER1Q2KHR3 1735 aa8.25□□□□□ -1.09
VPS53-209ENST00000570771 USP42Q9H9J4 1324 aaKnown RBP8.25□□□□□ -1.09
VPS53-209ENST00000570771 CACNA1FO60840 1977 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 COL4A1P02462 1669 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 CARMIL3Q8ND23 1372 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 UTRNP46939 3433 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 ZBTB7AO95365 584 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 NEFLP07196 543 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 HOXB7P09629 217 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 GYS1P13807 737 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 DDR1Q08345 913 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 SGIP1Q9BQI5 828 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 STK32BQ9NY57 414 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 TFCP2L1Q9NZI6 479 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 UBN2Q6ZU65 1347 aa8.24□□□□□ -1.09
VPS53-209ENST00000570771 F6X3S4 739 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 SSFA2P28290 1259 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 IL6STP40189 918 aaPredicted RBP8.23□□□□□ -1.09
VPS53-209ENST00000570771 PTGER2P43116 358 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 AIMP1Q12904 312 aaKnown RBP8.23□□□□□ -1.09
VPS53-209ENST00000570771 USPL1Q5W0Q7 1092 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 COPS6Q7L5N1 327 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 ZBTB3Q9H5J0 574 aa8.23□□□□□ -1.09
VPS53-209ENST00000570771 DDX21Q9NR30 783 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS53-209ENST00000570771 STARD3NLO95772 234 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms