RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 DDR1Q08345 913 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 NFIXQ14938 502 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 NBPF10Q6P3W6 841 aaKnown RBP12.75□□□□□ -0.37
CLN6-209ENST00000569336 KIF6Q6ZMV9 814 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 TIAM2Q8IVF5 1701 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 DDX60Q8IY21 1712 aaKnown RBP12.75□□□□□ -0.37
CLN6-209ENST00000569336 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 NBPF15Q8N660 670 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 CHMP4AQ9BY43 222 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 BCL2L12Q9HB09 334 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 TNRC6CQ9HCJ0 1690 aaKnown RBP12.75□□□□□ -0.37
CLN6-209ENST00000569336 MBIPQ9NS73 344 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 ATP10DQ9P241 1426 aa12.74□□□□□ -0.37
CLN6-209ENST00000569336 IL16Q14005 1332 aa12.74□□□□□ -0.37
CLN6-209ENST00000569336 CEP350Q5VT06 3117 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 CCER2I3L3R5 266 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 NPHP1O15259 732 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 ZNF853P0CG23 659 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 MYL6BP14649 208 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 EIF2S2P20042 333 aaKnown RBP12.73□□□□□ -0.37
CLN6-209ENST00000569336 WWC1Q8IX03 1113 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 SETDB2Q96T68 719 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 SLX4Q8IY92 1834 aa12.73□□□□□ -0.37
CLN6-209ENST00000569336 MAP3K15Q6ZN16 1313 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 GRIN3BO60391 1043 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 SERPINB2P05120 415 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 HDGFL1Q5TGJ6 251 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 TBC1D9BQ66K14 1250 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 BICDL1Q6ZP65 573 aa12.72□□□□□ -0.37
CLN6-209ENST00000569336 IBTKQ9P2D0 1353 aaPredicted RBP12.71□□□□□ -0.37
CLN6-209ENST00000569336 ERVV-1B6SEH8 477 aa12.71□□□□□ -0.37
CLN6-209ENST00000569336 HSPA6P17066 643 aa12.71□□□□□ -0.37
CLN6-209ENST00000569336 ST5P78524 1137 aa12.71□□□□□ -0.37
CLN6-209ENST00000569336 CNBD1Q8NA66 436 aa12.71□□□□□ -0.37
CLN6-209ENST00000569336 DDX21Q9NR30 783 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLN6-209ENST00000569336 DBF4Q9UBU7 674 aaPredicted RBP12.71□□□□□ -0.37
CLN6-209ENST00000569336 PDZRN3Q9UPQ7 1066 aa12.71□□□□□ -0.37
CLN6-209ENST00000569336 TAF1P21675 1872 aa12.7□□□□□ -0.38
CLN6-209ENST00000569336 SPEF2Q9C093 1822 aa12.7□□□□□ -0.38
CLN6-209ENST00000569336 DUSP27Q5VZP5 1158 aa12.7□□□□□ -0.38
CLN6-209ENST00000569336 WDR63Q8IWG1 891 aa12.7□□□□□ -0.38
CLN6-209ENST00000569336 NIP7Q9Y221 180 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLN6-209ENST00000569336 RIC1Q4ADV7 1423 aa12.7□□□□□ -0.38
CLN6-209ENST00000569336 KRT24Q2M2I5 525 aa12.69□□□□□ -0.38
CLN6-209ENST00000569336 DIEXFQ68CQ4 756 aaKnown RBP12.69□□□□□ -0.38
CLN6-209ENST00000569336 NBPF5PQ86XG9 351 aaPredicted RBP12.69□□□□□ -0.38
CLN6-209ENST00000569336 NYXQ9GZU5 481 aa12.69□□□□□ -0.38
CLN6-209ENST00000569336 HYPKQ9NX55 129 aa12.69□□□□□ -0.38
CLN6-209ENST00000569336 CHPF2Q9P2E5 772 aa12.69□□□□□ -0.38
CLN6-209ENST00000569336 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 DPEP1P16444 411 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 YBX3P16989 372 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLN6-209ENST00000569336 PDE6BP35913 854 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 PDIA6Q15084 440 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 HSP90AB3PQ58FF7 597 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 PRR5LQ6MZQ0 368 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 NECTIN2Q92692 538 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 ZBTB3Q9H5J0 574 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 PIM2Q9P1W9 311 aa12.68□□□□□ -0.38
CLN6-209ENST00000569336 PROSER3Q2NL68 480 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 TPTE2Q6XPS3 522 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 GIGYF2Q6Y7W6 1299 aaKnown RBP12.67□□□□□ -0.38
CLN6-209ENST00000569336 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 LRP10Q7Z4F1 713 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 TSR2Q969E8 191 aaKnown RBP12.67□□□□□ -0.38
CLN6-209ENST00000569336 BRIP1Q9BX63 1249 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 MYH16Q9H6N6 1097 aa12.67□□□□□ -0.38
CLN6-209ENST00000569336 GPBP1L1Q9HC44 474 aaPredicted RBP12.67□□□□□ -0.38
CLN6-209ENST00000569336 RNF123Q5XPI4 1314 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 FANCIQ9NVI1 1328 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 H0YIN7 160 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 ANXA1P04083 346 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 HLFQ16534 295 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 PARP10Q53GL7 1025 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 CCDC30Q5VVM6 783 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 ZNF526Q8TF50 670 aaPredicted RBP12.66□□□□□ -0.38
CLN6-209ENST00000569336 STK31Q9BXU1 1019 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 BCS1LQ9Y276 419 aa12.66□□□□□ -0.38
CLN6-209ENST00000569336 SALL2Q9Y467 1007 aaPredicted RBP12.66□□□□□ -0.38
CLN6-209ENST00000569336 GTF2E1P29083 439 aaPredicted RBP12.65□□□□□ -0.38
CLN6-209ENST00000569336 DALRD3Q5D0E6 543 aaKnown RBP12.65□□□□□ -0.38
CLN6-209ENST00000569336 COPS6Q7L5N1 327 aa12.65□□□□□ -0.38
CLN6-209ENST00000569336 C2CD5Q86YS7 1000 aa12.65□□□□□ -0.38
CLN6-209ENST00000569336 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
CLN6-209ENST00000569336 LRRC37AA6NMS7 1700 aa12.65□□□□□ -0.38
CLN6-209ENST00000569336 ELL2O00472 640 aaPredicted RBP12.64□□□□□ -0.39
CLN6-209ENST00000569336 CHRNA5P30532 468 aa12.64□□□□□ -0.39
CLN6-209ENST00000569336 GOLGA2Q08379 1002 aa12.64□□□□□ -0.39
CLN6-209ENST00000569336 AIMP1Q12904 312 aaKnown RBP12.64□□□□□ -0.39
CLN6-209ENST00000569336 TWISTNBQ3B726 338 aaPredicted RBP12.64□□□□□ -0.39
CLN6-209ENST00000569336 PPP1R42Q7Z4L9 355 aa12.64□□□□□ -0.39
CLN6-209ENST00000569336 C8orf58Q8NAV2 365 aa12.64□□□□□ -0.39
CLN6-209ENST00000569336 WWC3Q9ULE0 1092 aa12.64□□□□□ -0.39
CLN6-209ENST00000569336 UBN2Q6ZU65 1347 aa12.63□□□□□ -0.39
CLN6-209ENST00000569336 DDX58O95786 925 aaKnown RBP12.63□□□□□ -0.39
CLN6-209ENST00000569336 KCNA3P22001 575 aa12.63□□□□□ -0.39
CLN6-209ENST00000569336 GPTP24298 496 aa12.63□□□□□ -0.39
CLN6-209ENST00000569336 ZNF34Q8IZ26 560 aa12.63□□□□□ -0.39
CLN6-209ENST00000569336 PLBD2Q8NHP8 589 aa12.63□□□□□ -0.39
CLN6-209ENST00000569336 ZNF521Q96K83 1311 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms