RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GPBP1L1Q9HC44 474 aaPredicted RBP19.57■□□□□ 0.72
CLN3-213ENST00000565047 KLRG2A4D1S0 409 aaPredicted RBP19.56■□□□□ 0.72
CLN3-213ENST00000565047 ERVV-1B6SEH8 477 aa19.56■□□□□ 0.72
CLN3-213ENST00000565047 LMOD3Q0VAK6 560 aa19.56■□□□□ 0.72
CLN3-213ENST00000565047 WDR43Q15061 677 aaKnown RBP eCLIP19.56■□□□□ 0.72
CLN3-213ENST00000565047 C9orf131Q5VYM1 1079 aa19.56■□□□□ 0.72
CLN3-213ENST00000565047 CNBD1Q8NA66 436 aa19.56■□□□□ 0.72
CLN3-213ENST00000565047 PDZRN3Q9UPQ7 1066 aa19.56■□□□□ 0.72
CLN3-213ENST00000565047 KIF3CO14782 793 aa19.55■□□□□ 0.72
CLN3-213ENST00000565047 SRGNP10124 158 aa19.55■□□□□ 0.72
CLN3-213ENST00000565047 TTLL7Q6ZT98 887 aa19.55■□□□□ 0.72
CLN3-213ENST00000565047 ZNF526Q8TF50 670 aaPredicted RBP19.55■□□□□ 0.72
CLN3-213ENST00000565047 ZNF652Q9Y2D9 606 aa19.55■□□□□ 0.72
CLN3-213ENST00000565047 ERBB4Q15303 1308 aa19.54■□□□□ 0.72
CLN3-213ENST00000565047 SBF1O95248 1867 aa19.54■□□□□ 0.72
CLN3-213ENST00000565047 NEUROD2Q15784 382 aa19.54■□□□□ 0.72
CLN3-213ENST00000565047 NIP7Q9Y221 180 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-213ENST00000565047 MAP3K15Q6ZN16 1313 aa19.53■□□□□ 0.72
CLN3-213ENST00000565047 NFKBIEO00221 500 aa19.52■□□□□ 0.72
CLN3-213ENST00000565047 MYL6BP14649 208 aa19.52■□□□□ 0.72
CLN3-213ENST00000565047 CCDC184Q52MB2 194 aa19.52■□□□□ 0.72
CLN3-213ENST00000565047 NBPF5PQ86XG9 351 aaPredicted RBP19.52■□□□□ 0.72
CLN3-213ENST00000565047 NGEFQ8N5V2 710 aa19.52■□□□□ 0.72
CLN3-213ENST00000565047 ST5P78524 1137 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 RASSF7Q02833 373 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 KRT24Q2M2I5 525 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 PROSER3Q2NL68 480 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 STYK1Q6J9G0 422 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 TPTE2Q6XPS3 522 aa19.51■□□□□ 0.71
CLN3-213ENST00000565047 ZNF622Q969S3 477 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-213ENST00000565047 C7orf43Q8WVR3 580 aa19.5■□□□□ 0.71
CLN3-213ENST00000565047 RNF181Q9P0P0 153 aa19.5■□□□□ 0.71
CLN3-213ENST00000565047 UBN2Q6ZU65 1347 aa19.5■□□□□ 0.71
CLN3-213ENST00000565047 NUP98P52948 1817 aa19.49■□□□□ 0.71
CLN3-213ENST00000565047 ZNF853P0CG23 659 aa19.49■□□□□ 0.71
CLN3-213ENST00000565047 ZNF34Q8IZ26 560 aa19.49■□□□□ 0.71
CLN3-213ENST00000565047 MASTLQ96GX5 879 aa19.49■□□□□ 0.71
CLN3-213ENST00000565047 SLX4Q8IY92 1834 aa19.48■□□□□ 0.71
CLN3-213ENST00000565047 C21orf2O43822 256 aa19.48■□□□□ 0.71
CLN3-213ENST00000565047 EIF2S2P20042 333 aaKnown RBP19.48■□□□□ 0.71
CLN3-213ENST00000565047 GIGYF2Q6Y7W6 1299 aaKnown RBP19.48■□□□□ 0.71
CLN3-213ENST00000565047 CNKSR1Q969H4 720 aa19.48■□□□□ 0.71
CLN3-213ENST00000565047 APAF1O14727 1248 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 ANXA1P04083 346 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 LMNB1P20700 586 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 CFAP44Q96MT7 982 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 ZBTB3Q9H5J0 574 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 NMRK2Q9NPI5 230 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 FER1L6Q2WGJ9 1857 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 ARFGEF2Q9Y6D5 1785 aa19.47■□□□□ 0.71
CLN3-213ENST00000565047 ABCC12Q96J65 1359 aa19.46■□□□□ 0.71
CLN3-213ENST00000565047 IBTKQ9P2D0 1353 aaPredicted RBP19.46■□□□□ 0.71
CLN3-213ENST00000565047 ZNF316A6NFI3 1004 aaPredicted RBP19.46■□□□□ 0.71
CLN3-213ENST00000565047 CRY2Q49AN0 593 aa19.46■□□□□ 0.71
CLN3-213ENST00000565047 SUSD4Q5VX71 490 aa19.46■□□□□ 0.71
CLN3-213ENST00000565047 PRPF40BQ6NWY9 871 aaKnown RBP19.46■□□□□ 0.71
CLN3-213ENST00000565047 KIF6Q6ZMV9 814 aa19.46■□□□□ 0.71
CLN3-213ENST00000565047 FAM177BA6PVY3 158 aa19.45■□□□□ 0.7
CLN3-213ENST00000565047 NPR1P16066 1061 aa19.45■□□□□ 0.7
CLN3-213ENST00000565047 TNRC6CQ9HCJ0 1690 aaKnown RBP19.45■□□□□ 0.7
CLN3-213ENST00000565047 LTBP3Q9NS15 1303 aa19.45■□□□□ 0.7
CLN3-213ENST00000565047 ZC3H4Q9UPT8 1303 aaKnown RBP19.45■□□□□ 0.7
CLN3-213ENST00000565047 CEP350Q5VT06 3117 aa19.45■□□□□ 0.7
CLN3-213ENST00000565047 RIC1Q4ADV7 1423 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 SENP3-EIF4A1A0A087X0R7 540 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 NPHP1O15259 732 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 ERFEQ4G0M1 354 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 NUTM1Q86Y26 1132 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 DDX21Q9NR30 783 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLN3-213ENST00000565047 MBIPQ9NS73 344 aa19.44■□□□□ 0.7
CLN3-213ENST00000565047 NTSR2O95665 410 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 HOXB7P09629 217 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 GPTP24298 496 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 COPS6Q7L5N1 327 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 NECTIN2Q92692 538 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 NYXQ9GZU5 481 aa19.43■□□□□ 0.7
CLN3-213ENST00000565047 ZNF219Q9P2Y4 722 aaPredicted RBP19.43■□□□□ 0.7
CLN3-213ENST00000565047 LAS1LQ9Y4W2 734 aaKnown RBP19.43■□□□□ 0.7
CLN3-213ENST00000565047 SNED1Q8TER0 1413 aa19.42■□□□□ 0.7
CLN3-213ENST00000565047 TOMM70O94826 608 aa19.41■□□□□ 0.7
CLN3-213ENST00000565047 HOXA10P31260 410 aaPredicted RBP19.41■□□□□ 0.7
CLN3-213ENST00000565047 XAGE3Q8WTP9 111 aa19.41■□□□□ 0.7
CLN3-213ENST00000565047 IFT57Q9NWB7 429 aa19.41■□□□□ 0.7
CLN3-213ENST00000565047 CCDC88AQ3V6T2 1871 aa19.4■□□□□ 0.7
CLN3-213ENST00000565047 GLTPD2A6NH11 291 aa19.4■□□□□ 0.7
CLN3-213ENST00000565047 CHPF2Q9P2E5 772 aa19.4■□□□□ 0.7
CLN3-213ENST00000565047 CACNA1SQ13698 1873 aa19.39■□□□□ 0.7
CLN3-213ENST00000565047 PARP10Q53GL7 1025 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 SLC10A5Q5PT55 438 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 SOGA3Q5TF21 947 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 DUSP27Q5VZP5 1158 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 OLFM4Q6UX06 510 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 C3orf67Q6ZVT6 689 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 KDM2BQ8NHM5 1336 aa19.39■□□□□ 0.69
CLN3-213ENST00000565047 POTECB2RU33 542 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 HSPA6P17066 643 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 GTF2E1P29083 439 aaPredicted RBP19.38■□□□□ 0.69
CLN3-213ENST00000565047 ALDH1B1P30837 517 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 HDGFL1Q5TGJ6 251 aa19.38■□□□□ 0.69
CLN3-213ENST00000565047 TIAM2Q8IVF5 1701 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms