RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TBC1D9BQ66K14 1250 aa17.42■□□□□ 0.38
CLK3-216ENST00000564468 PXDNLA1KZ92 1463 aa17.42■□□□□ 0.38
CLK3-216ENST00000564468 KIF6Q6ZMV9 814 aa17.41■□□□□ 0.38
CLK3-216ENST00000564468 A0A0G2JLW4 131 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 ERVV-1B6SEH8 477 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 NPHP1O15259 732 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 ZNF853P0CG23 659 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 MYL6BP14649 208 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 APLP1P51693 650 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 NGEFQ8N5V2 710 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 CHMP4AQ9BY43 222 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 PDZRN3Q9UPQ7 1066 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 ARFGEF1Q9Y6D6 1849 aa17.4■□□□□ 0.38
CLK3-216ENST00000564468 DPEP1P16444 411 aa17.39■□□□□ 0.37
CLK3-216ENST00000564468 MBIPQ9NS73 344 aa17.39■□□□□ 0.37
CLK3-216ENST00000564468 FAM9BQ8IZU0 186 aa17.38■□□□□ 0.37
CLK3-216ENST00000564468 PIM2Q9P1W9 311 aa17.38■□□□□ 0.37
CLK3-216ENST00000564468 WWC3Q9ULE0 1092 aa17.38■□□□□ 0.37
CLK3-216ENST00000564468 MAP3K15Q6ZN16 1313 aa17.38■□□□□ 0.37
CLK3-216ENST00000564468 ST5P78524 1137 aa17.37■□□□□ 0.37
CLK3-216ENST00000564468 WWC1Q8IX03 1113 aa17.37■□□□□ 0.37
CLK3-216ENST00000564468 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
CLK3-216ENST00000564468 NIP7Q9Y221 180 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLK3-216ENST00000564468 DLEC1Q9Y238 1755 aa17.37■□□□□ 0.37
CLK3-216ENST00000564468 ANKRD31Q8N7Z5 1873 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 KIF3CO14782 793 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 TOMM70O94826 608 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 PDE6BP35913 854 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 HDGFL1Q5TGJ6 251 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 BRIP1Q9BX63 1249 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 DDX21Q9NR30 783 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLK3-216ENST00000564468 BCS1LQ9Y276 419 aa17.36■□□□□ 0.37
CLK3-216ENST00000564468 H0YIN7 160 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 KCNA3P22001 575 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 PDIA6Q15084 440 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 KRT24Q2M2I5 525 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 DUSP27Q5VZP5 1158 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 TPTE2Q6XPS3 522 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 NBPF5PQ86XG9 351 aaPredicted RBP17.35■□□□□ 0.37
CLK3-216ENST00000564468 NECTIN2Q92692 538 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 IL16Q14005 1332 aa17.35■□□□□ 0.37
CLK3-216ENST00000564468 CACNA1FO60840 1977 aa17.34■□□□□ 0.37
CLK3-216ENST00000564468 HLFQ16534 295 aa17.34■□□□□ 0.37
CLK3-216ENST00000564468 DALRD3Q5D0E6 543 aaKnown RBP17.34■□□□□ 0.37
CLK3-216ENST00000564468 TTLL7Q6ZT98 887 aa17.34■□□□□ 0.37
CLK3-216ENST00000564468 NYXQ9GZU5 481 aa17.34■□□□□ 0.37
CLK3-216ENST00000564468 DBF4Q9UBU7 674 aaPredicted RBP17.34■□□□□ 0.37
CLK3-216ENST00000564468 CHRNA5P30532 468 aa17.33■□□□□ 0.36
CLK3-216ENST00000564468 GIGYF2Q6Y7W6 1299 aaKnown RBP17.33■□□□□ 0.36
CLK3-216ENST00000564468 C2CD5Q86YS7 1000 aa17.33■□□□□ 0.36
CLK3-216ENST00000564468 WDR63Q8IWG1 891 aa17.33■□□□□ 0.36
CLK3-216ENST00000564468 ZBTB3Q9H5J0 574 aa17.33■□□□□ 0.36
CLK3-216ENST00000564468 ANKRD36CQ5JPF3 1778 aa17.33■□□□□ 0.36
CLK3-216ENST00000564468 GTF2E1P29083 439 aaPredicted RBP17.32■□□□□ 0.36
CLK3-216ENST00000564468 HSP90AB3PQ58FF7 597 aa17.32■□□□□ 0.36
CLK3-216ENST00000564468 COPS6Q7L5N1 327 aa17.32■□□□□ 0.36
CLK3-216ENST00000564468 LRP10Q7Z4F1 713 aa17.32■□□□□ 0.36
CLK3-216ENST00000564468 HYPKQ9NX55 129 aa17.32■□□□□ 0.36
CLK3-216ENST00000564468 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
CLK3-216ENST00000564468 CCER2I3L3R5 266 aa17.31■□□□□ 0.36
CLK3-216ENST00000564468 ANXA1P04083 346 aa17.31■□□□□ 0.36
CLK3-216ENST00000564468 PROSER3Q2NL68 480 aa17.31■□□□□ 0.36
CLK3-216ENST00000564468 AIMP1Q12904 312 aaKnown RBP17.3■□□□□ 0.36
CLK3-216ENST00000564468 PARP10Q53GL7 1025 aa17.3■□□□□ 0.36
CLK3-216ENST00000564468 ARHGAP27Q6ZUM4 889 aa17.3■□□□□ 0.36
CLK3-216ENST00000564468 C16orf71Q8IYS4 520 aaPredicted RBP17.3■□□□□ 0.36
CLK3-216ENST00000564468 TTLL6Q8N841 843 aa17.3■□□□□ 0.36
CLK3-216ENST00000564468 XAGE3Q8WTP9 111 aa17.3■□□□□ 0.36
CLK3-216ENST00000564468 SALL2Q9Y467 1007 aaPredicted RBP17.3■□□□□ 0.36
CLK3-216ENST00000564468 IBTKQ9P2D0 1353 aaPredicted RBP17.29■□□□□ 0.36
CLK3-216ENST00000564468 CACNA1SQ13698 1873 aa17.29■□□□□ 0.36
CLK3-216ENST00000564468 ELL2O00472 640 aaPredicted RBP17.29■□□□□ 0.36
CLK3-216ENST00000564468 CCDC30Q5VVM6 783 aa17.29■□□□□ 0.36
CLK3-216ENST00000564468 PPP1R42Q7Z4L9 355 aa17.29■□□□□ 0.36
CLK3-216ENST00000564468 ZNF34Q8IZ26 560 aa17.29■□□□□ 0.36
CLK3-216ENST00000564468 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
CLK3-216ENST00000564468 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
CLK3-216ENST00000564468 C8orf58Q8NAV2 365 aa17.28■□□□□ 0.36
CLK3-216ENST00000564468 ZNF622Q969S3 477 aaKnown RBP eCLIP17.28■□□□□ 0.362e-8■■□□□ 11.4
CLK3-216ENST00000564468 ARFGEF2Q9Y6D5 1785 aa17.28■□□□□ 0.36
CLK3-216ENST00000564468 COL11A2P13942 1736 aaPredicted RBP17.27■□□□□ 0.36
CLK3-216ENST00000564468 GPTP24298 496 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 STYK1Q6J9G0 422 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 ANKRD13DQ6ZTN6 518 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 DNAJC5GQ8N7S2 189 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 PLBD2Q8NHP8 589 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 TSR2Q969E8 191 aaKnown RBP17.27■□□□□ 0.36
CLK3-216ENST00000564468 CNKSR1Q969H4 720 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 MASTLQ96GX5 879 aa17.27■□□□□ 0.36
CLK3-216ENST00000564468 SBF1O95248 1867 aa17.27■□□□□ 0.35
CLK3-216ENST00000564468 SRGNP10124 158 aa17.26■□□□□ 0.35
CLK3-216ENST00000564468 RBM46Q8TBY0 533 aaKnown RBP17.26■□□□□ 0.35
CLK3-216ENST00000564468 CCDC88AQ3V6T2 1871 aa17.26■□□□□ 0.35
CLK3-216ENST00000564468 RNF123Q5XPI4 1314 aa17.25■□□□□ 0.35
CLK3-216ENST00000564468 GOLGA2Q08379 1002 aa17.25■□□□□ 0.35
CLK3-216ENST00000564468 TCIRG1Q13488 830 aa17.25■□□□□ 0.35
CLK3-216ENST00000564468 TWISTNBQ3B726 338 aaPredicted RBP17.25■□□□□ 0.35
CLK3-216ENST00000564468 SUSD4Q5VX71 490 aa17.25■□□□□ 0.35
CLK3-216ENST00000564468 STK31Q9BXU1 1019 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms