RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 YBX3P16989 372 aaKnown RBP eCLIP17.4■□□□□ 0.382e-6■■■□□ 18.1
CLK3-213ENST00000563842 NGEFQ8N5V2 710 aa17.4■□□□□ 0.38
CLK3-213ENST00000563842 CHMP4AQ9BY43 222 aa17.4■□□□□ 0.38
CLK3-213ENST00000563842 PDZRN3Q9UPQ7 1066 aa17.4■□□□□ 0.38
CLK3-213ENST00000563842 ARFGEF1Q9Y6D6 1849 aa17.4■□□□□ 0.38
CLK3-213ENST00000563842 DPEP1P16444 411 aa17.39■□□□□ 0.37
CLK3-213ENST00000563842 MBIPQ9NS73 344 aa17.39■□□□□ 0.37
CLK3-213ENST00000563842 FAM9BQ8IZU0 186 aa17.38■□□□□ 0.37
CLK3-213ENST00000563842 PIM2Q9P1W9 311 aa17.38■□□□□ 0.37
CLK3-213ENST00000563842 MAP3K15Q6ZN16 1313 aa17.38■□□□□ 0.37
CLK3-213ENST00000563842 ST5P78524 1137 aa17.37■□□□□ 0.37
CLK3-213ENST00000563842 WWC1Q8IX03 1113 aa17.37■□□□□ 0.37
CLK3-213ENST00000563842 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
CLK3-213ENST00000563842 NIP7Q9Y221 180 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLK3-213ENST00000563842 DLEC1Q9Y238 1755 aa17.37■□□□□ 0.37
CLK3-213ENST00000563842 ANKRD31Q8N7Z5 1873 aa17.36■□□□□ 0.37
CLK3-213ENST00000563842 PDE6BP35913 854 aa17.36■□□□□ 0.37
CLK3-213ENST00000563842 HDGFL1Q5TGJ6 251 aa17.36■□□□□ 0.37
CLK3-213ENST00000563842 BRIP1Q9BX63 1249 aa17.36■□□□□ 0.37
CLK3-213ENST00000563842 DDX21Q9NR30 783 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLK3-213ENST00000563842 BCS1LQ9Y276 419 aa17.36■□□□□ 0.37
CLK3-213ENST00000563842 H0YIN7 160 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 KCNA3P22001 575 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 PDIA6Q15084 440 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 KRT24Q2M2I5 525 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 DUSP27Q5VZP5 1158 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 TPTE2Q6XPS3 522 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 NBPF5PQ86XG9 351 aaPredicted RBP17.35■□□□□ 0.37
CLK3-213ENST00000563842 NECTIN2Q92692 538 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 WWC3Q9ULE0 1092 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 IL16Q14005 1332 aa17.35■□□□□ 0.37
CLK3-213ENST00000563842 CACNA1FO60840 1977 aa17.34■□□□□ 0.37
CLK3-213ENST00000563842 HLFQ16534 295 aa17.34■□□□□ 0.37
CLK3-213ENST00000563842 DALRD3Q5D0E6 543 aaKnown RBP17.34■□□□□ 0.37
CLK3-213ENST00000563842 TTLL7Q6ZT98 887 aa17.34■□□□□ 0.37
CLK3-213ENST00000563842 NYXQ9GZU5 481 aa17.34■□□□□ 0.37
CLK3-213ENST00000563842 DBF4Q9UBU7 674 aaPredicted RBP17.34■□□□□ 0.37
CLK3-213ENST00000563842 GOLGB1Q14789 3259 aaKnown RBP17.33■□□□□ 0.37
CLK3-213ENST00000563842 ATP10DQ9P241 1426 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 CHRNA5P30532 468 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 GIGYF2Q6Y7W6 1299 aaKnown RBP17.33■□□□□ 0.36
CLK3-213ENST00000563842 C2CD5Q86YS7 1000 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 WDR63Q8IWG1 891 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 ZBTB3Q9H5J0 574 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 ANKRD36CQ5JPF3 1778 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 UTRNP46939 3433 aa17.33■□□□□ 0.36
CLK3-213ENST00000563842 GTF2E1P29083 439 aaPredicted RBP17.32■□□□□ 0.36
CLK3-213ENST00000563842 HSP90AB3PQ58FF7 597 aa17.32■□□□□ 0.36
CLK3-213ENST00000563842 COPS6Q7L5N1 327 aa17.32■□□□□ 0.36
CLK3-213ENST00000563842 LRP10Q7Z4F1 713 aa17.32■□□□□ 0.36
CLK3-213ENST00000563842 HYPKQ9NX55 129 aa17.32■□□□□ 0.36
CLK3-213ENST00000563842 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
CLK3-213ENST00000563842 CCER2I3L3R5 266 aa17.31■□□□□ 0.36
CLK3-213ENST00000563842 ANXA1P04083 346 aa17.31■□□□□ 0.36
CLK3-213ENST00000563842 PROSER3Q2NL68 480 aa17.31■□□□□ 0.36
CLK3-213ENST00000563842 AIMP1Q12904 312 aaKnown RBP17.3■□□□□ 0.36
CLK3-213ENST00000563842 PARP10Q53GL7 1025 aa17.3■□□□□ 0.36
CLK3-213ENST00000563842 TTLL6Q8N841 843 aa17.3■□□□□ 0.36
CLK3-213ENST00000563842 XAGE3Q8WTP9 111 aa17.3■□□□□ 0.36
CLK3-213ENST00000563842 SALL2Q9Y467 1007 aaPredicted RBP17.3■□□□□ 0.36
CLK3-213ENST00000563842 IBTKQ9P2D0 1353 aaPredicted RBP17.29■□□□□ 0.36
CLK3-213ENST00000563842 CACNA1SQ13698 1873 aa17.29■□□□□ 0.36
CLK3-213ENST00000563842 ELL2O00472 640 aaPredicted RBP17.29■□□□□ 0.36
CLK3-213ENST00000563842 CCDC30Q5VVM6 783 aa17.29■□□□□ 0.36
CLK3-213ENST00000563842 ARHGAP27Q6ZUM4 889 aa17.29■□□□□ 0.36
CLK3-213ENST00000563842 PPP1R42Q7Z4L9 355 aa17.29■□□□□ 0.36
CLK3-213ENST00000563842 ZNF34Q8IZ26 560 aa17.29■□□□□ 0.36
CLK3-213ENST00000563842 FAM177BA6PVY3 158 aa17.28■□□□□ 0.36
CLK3-213ENST00000563842 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
CLK3-213ENST00000563842 C8orf58Q8NAV2 365 aa17.28■□□□□ 0.36
CLK3-213ENST00000563842 ZNF622Q969S3 477 aaKnown RBP eCLIP17.28■□□□□ 0.363e-8■□□□□ 10.7
CLK3-213ENST00000563842 ARFGEF2Q9Y6D5 1785 aa17.28■□□□□ 0.36
CLK3-213ENST00000563842 COL11A2P13942 1736 aaPredicted RBP17.27■□□□□ 0.36
CLK3-213ENST00000563842 GPTP24298 496 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 STYK1Q6J9G0 422 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 ANKRD13DQ6ZTN6 518 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 PLBD2Q8NHP8 589 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 TSR2Q969E8 191 aaKnown RBP17.27■□□□□ 0.36
CLK3-213ENST00000563842 CNKSR1Q969H4 720 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 MASTLQ96GX5 879 aa17.27■□□□□ 0.36
CLK3-213ENST00000563842 SBF1O95248 1867 aa17.27■□□□□ 0.35
CLK3-213ENST00000563842 SRGNP10124 158 aa17.26■□□□□ 0.35
CLK3-213ENST00000563842 CCDC88AQ3V6T2 1871 aa17.26■□□□□ 0.35
CLK3-213ENST00000563842 RNF123Q5XPI4 1314 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 GOLGA2Q08379 1002 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 TCIRG1Q13488 830 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 TWISTNBQ3B726 338 aaPredicted RBP17.25■□□□□ 0.35
CLK3-213ENST00000563842 SUSD4Q5VX71 490 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 STK31Q9BXU1 1019 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 MYH16Q9H6N6 1097 aa17.25■□□□□ 0.35
CLK3-213ENST00000563842 UBN2Q6ZU65 1347 aa17.24■□□□□ 0.35
CLK3-213ENST00000563842 RIC1Q4ADV7 1423 aa17.24■□□□□ 0.35
CLK3-213ENST00000563842 KLRG2A4D1S0 409 aaPredicted RBP17.24■□□□□ 0.35
CLK3-213ENST00000563842 NPR1P16066 1061 aa17.24■□□□□ 0.35
CLK3-213ENST00000563842 DIEXFQ68CQ4 756 aaKnown RBP17.24■□□□□ 0.35
CLK3-213ENST00000563842 UTP14AQ9BVJ6 771 aaKnown RBP17.24■□□□□ 0.35
CLK3-213ENST00000563842 SLX4Q8IY92 1834 aa17.24■□□□□ 0.35
CLK3-213ENST00000563842 FANCIQ9NVI1 1328 aa17.23■□□□□ 0.35
CLK3-213ENST00000563842 DDX58O95786 925 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms