RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 YBX3P16989 372 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS33B-206ENST00000557358 GTF2E1P29083 439 aaPredicted RBP17.9■□□□□ 0.46
VPS33B-206ENST00000557358 PDE6BP35913 854 aa17.9■□□□□ 0.46
VPS33B-206ENST00000557358 HDGFL1Q5TGJ6 251 aa17.9■□□□□ 0.46
VPS33B-206ENST00000557358 TPTE2Q6XPS3 522 aa17.9■□□□□ 0.46
VPS33B-206ENST00000557358 NIP7Q9Y221 180 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS33B-206ENST00000557358 BCORQ6W2J9 1755 aa17.89■□□□□ 0.45
VPS33B-206ENST00000557358 AFDNP55196 1824 aaKnown RBP17.89■□□□□ 0.45
VPS33B-206ENST00000557358 DALRD3Q5D0E6 543 aaKnown RBP17.89■□□□□ 0.45
VPS33B-206ENST00000557358 MBIPQ9NS73 344 aa17.89■□□□□ 0.45
VPS33B-206ENST00000557358 MAP3K15Q6ZN16 1313 aa17.89■□□□□ 0.45
VPS33B-206ENST00000557358 N4BP2Q86UW6 1770 aaPredicted RBP17.89■□□□□ 0.45
VPS33B-206ENST00000557358 NECTIN2Q92692 538 aa17.88■□□□□ 0.45
VPS33B-206ENST00000557358 BRIP1Q9BX63 1249 aa17.88■□□□□ 0.45
VPS33B-206ENST00000557358 NYXQ9GZU5 481 aa17.88■□□□□ 0.45
VPS33B-206ENST00000557358 DUSP27Q5VZP5 1158 aa17.87■□□□□ 0.45
VPS33B-206ENST00000557358 C2CD5Q86YS7 1000 aa17.87■□□□□ 0.45
VPS33B-206ENST00000557358 DDX21Q9NR30 783 aaKnown RBP eCLIP17.87■□□□□ 0.45
VPS33B-206ENST00000557358 DBF4Q9UBU7 674 aaPredicted RBP17.87■□□□□ 0.45
VPS33B-206ENST00000557358 ZNF853P0CG23 659 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 HSP90AB3PQ58FF7 597 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 PRR5LQ6MZQ0 368 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 WWC1Q8IX03 1113 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 ZBTB3Q9H5J0 574 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 NRXN2Q9P2S2 1712 aa17.86■□□□□ 0.45
VPS33B-206ENST00000557358 CHRNA5P30532 468 aa17.85■□□□□ 0.45
VPS33B-206ENST00000557358 IL16Q14005 1332 aa17.84■□□□□ 0.45
VPS33B-206ENST00000557358 AIMP1Q12904 312 aaKnown RBP17.84■□□□□ 0.45
VPS33B-206ENST00000557358 TTLL7Q6ZT98 887 aa17.84■□□□□ 0.45
VPS33B-206ENST00000557358 ARHGAP27Q6ZUM4 889 aa17.84■□□□□ 0.45
VPS33B-206ENST00000557358 TTLL6Q8N841 843 aa17.84■□□□□ 0.45
VPS33B-206ENST00000557358 ZNF622Q969S3 477 aaKnown RBP eCLIP17.84■□□□□ 0.45
VPS33B-206ENST00000557358 HYPKQ9NX55 129 aa17.84■□□□□ 0.45
VPS33B-206ENST00000557358 SALL2Q9Y467 1007 aaPredicted RBP17.84■□□□□ 0.45
VPS33B-206ENST00000557358 FAM177BA6PVY3 158 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 HLFQ16534 295 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 KRT24Q2M2I5 525 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 PARP10Q53GL7 1025 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 GIGYF2Q6Y7W6 1299 aaKnown RBP17.83■□□□□ 0.44
VPS33B-206ENST00000557358 COPS6Q7L5N1 327 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 PPP1R42Q7Z4L9 355 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 WDR63Q8IWG1 891 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 NUP98P52948 1817 aa17.83■□□□□ 0.44
VPS33B-206ENST00000557358 CCDC30Q5VVM6 783 aa17.82■□□□□ 0.44
VPS33B-206ENST00000557358 XAGE3Q8WTP9 111 aa17.82■□□□□ 0.44
VPS33B-206ENST00000557358 CNKSR1Q969H4 720 aa17.82■□□□□ 0.44
VPS33B-206ENST00000557358 CHPF2Q9P2E5 772 aa17.82■□□□□ 0.44
VPS33B-206ENST00000557358 GOLGB1Q14789 3259 aaKnown RBP17.82■□□□□ 0.44
VPS33B-206ENST00000557358 ATP10DQ9P241 1426 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 KIAA1551Q9HCM1 1747 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 ELL2O00472 640 aaPredicted RBP17.81■□□□□ 0.44
VPS33B-206ENST00000557358 ANXA1P04083 346 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 KCNA3P22001 575 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 PDIA6Q15084 440 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 STK31Q9BXU1 1019 aa17.81■□□□□ 0.44
VPS33B-206ENST00000557358 BRCA1P38398 1863 aaKnown RBP17.81■□□□□ 0.44
VPS33B-206ENST00000557358 ARFGEF1Q9Y6D6 1849 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 SENP3-EIF4A1A0A087X0R7 540 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 CCER2I3L3R5 266 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 GPTP24298 496 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 GOLGA2Q08379 1002 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 PROSER3Q2NL68 480 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 MASTLQ96GX5 879 aa17.8■□□□□ 0.44
VPS33B-206ENST00000557358 UTRNP46939 3433 aa17.79■□□□□ 0.44
VPS33B-206ENST00000557358 DDX58O95786 925 aaKnown RBP17.79■□□□□ 0.44
VPS33B-206ENST00000557358 STYK1Q6J9G0 422 aa17.79■□□□□ 0.44
VPS33B-206ENST00000557358 CCDC24Q8N4L8 307 aa17.79■□□□□ 0.44
VPS33B-206ENST00000557358 MYH16Q9H6N6 1097 aa17.79■□□□□ 0.44
VPS33B-206ENST00000557358 IBTKQ9P2D0 1353 aaPredicted RBP17.79■□□□□ 0.44
VPS33B-206ENST00000557358 SOGA3Q5TF21 947 aa17.78■□□□□ 0.44
VPS33B-206ENST00000557358 ANKRD13DQ6ZTN6 518 aa17.78■□□□□ 0.44
VPS33B-206ENST00000557358 PLBD2Q8NHP8 589 aa17.78■□□□□ 0.44
VPS33B-206ENST00000557358 TSR2Q969E8 191 aaKnown RBP17.78■□□□□ 0.44
VPS33B-206ENST00000557358 RNF123Q5XPI4 1314 aa17.77■□□□□ 0.44
VPS33B-206ENST00000557358 LRP10Q7Z4F1 713 aa17.77■□□□□ 0.44
VPS33B-206ENST00000557358 ZNF34Q8IZ26 560 aa17.77■□□□□ 0.44
VPS33B-206ENST00000557358 C8orf58Q8NAV2 365 aa17.77■□□□□ 0.44
VPS33B-206ENST00000557358 UTP14AQ9BVJ6 771 aaKnown RBP17.77■□□□□ 0.44
VPS33B-206ENST00000557358 DLEC1Q9Y238 1755 aa17.76■□□□□ 0.43
VPS33B-206ENST00000557358 SRGNP10124 158 aa17.76■□□□□ 0.43
VPS33B-206ENST00000557358 NPR1P16066 1061 aa17.76■□□□□ 0.43
VPS33B-206ENST00000557358 TCIRG1Q13488 830 aa17.76■□□□□ 0.43
VPS33B-206ENST00000557358 TWISTNBQ3B726 338 aaPredicted RBP17.76■□□□□ 0.43
VPS33B-206ENST00000557358 RIC3Q7Z5B4 369 aa17.76■□□□□ 0.43
VPS33B-206ENST00000557358 ZNF784Q8NCA9 323 aaPredicted RBP17.76■□□□□ 0.43
VPS33B-206ENST00000557358 ANKRD31Q8N7Z5 1873 aa17.75■□□□□ 0.43
VPS33B-206ENST00000557358 ALDH1B1P30837 517 aa17.75■□□□□ 0.43
VPS33B-206ENST00000557358 SUSD4Q5VX71 490 aa17.75■□□□□ 0.43
VPS33B-206ENST00000557358 RPGRQ92834 1020 aaKnown RBP17.75■□□□□ 0.43
VPS33B-206ENST00000557358 NUTM1Q86Y26 1132 aa17.74■□□□□ 0.43
VPS33B-206ENST00000557358 NLRP3Q96P20 1036 aa17.74■□□□□ 0.43
VPS33B-206ENST00000557358 TMX4Q9H1E5 349 aaPredicted RBP17.74■□□□□ 0.43
VPS33B-206ENST00000557358 FANCIQ9NVI1 1328 aa17.73■□□□□ 0.43
VPS33B-206ENST00000557358 HSP90B1P14625 803 aaKnown RBP17.73■□□□□ 0.43
VPS33B-206ENST00000557358 ERFEQ4G0M1 354 aa17.73■□□□□ 0.43
VPS33B-206ENST00000557358 TRMT112Q9UI30 125 aaKnown RBP17.73■□□□□ 0.43
VPS33B-206ENST00000557358 UBN2Q6ZU65 1347 aa17.72■□□□□ 0.43
VPS33B-206ENST00000557358 PRPF40BQ6NWY9 871 aaKnown RBP17.72■□□□□ 0.43
VPS33B-206ENST00000557358 SH3TC1Q8TE82 1336 aa17.72■□□□□ 0.43
VPS33B-206ENST00000557358 ANKRD36CQ5JPF3 1778 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms