RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 GPR162Q16538 588 aa16.18■□□□□ 0.18
SLIRP-209ENST00000557342 HDGFL1Q5TGJ6 251 aa16.18■□□□□ 0.18
SLIRP-209ENST00000557342 DDX21Q9NR30 783 aaKnown RBP eCLIP16.18■□□□□ 0.18
SLIRP-209ENST00000557342 SALL2Q9Y467 1007 aaPredicted RBP16.18■□□□□ 0.18
SLIRP-209ENST00000557342 MAP3K15Q6ZN16 1313 aa16.18■□□□□ 0.18
SLIRP-209ENST00000557342 PDIA6Q15084 440 aa16.17■□□□□ 0.18
SLIRP-209ENST00000557342 NECTIN2Q92692 538 aa16.17■□□□□ 0.18
SLIRP-209ENST00000557342 PXDNLA1KZ92 1463 aa16.16■□□□□ 0.18
SLIRP-209ENST00000557342 ANKRD36CQ5JPF3 1778 aa16.16■□□□□ 0.18
SLIRP-209ENST00000557342 PELP1Q8IZL8 1130 aaKnown RBP16.16■□□□□ 0.18
SLIRP-209ENST00000557342 DBF4Q9UBU7 674 aaPredicted RBP16.16■□□□□ 0.18
SLIRP-209ENST00000557342 DLEC1Q9Y238 1755 aa16.15■□□□□ 0.18
SLIRP-209ENST00000557342 CACNA1FO60840 1977 aa16.15■□□□□ 0.18
SLIRP-209ENST00000557342 TTLL7Q6ZT98 887 aa16.15■□□□□ 0.18
SLIRP-209ENST00000557342 LRP10Q7Z4F1 713 aa16.15■□□□□ 0.18
SLIRP-209ENST00000557342 ANKRD31Q8N7Z5 1873 aa16.15■□□□□ 0.18
SLIRP-209ENST00000557342 NPHP1O15259 732 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 GRIN3BO60391 1043 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 HLFQ16534 295 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 PROSER3Q2NL68 480 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 C8orf58Q8NAV2 365 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 TSR2Q969E8 191 aaKnown RBP16.14■□□□□ 0.17
SLIRP-209ENST00000557342 CHPF2Q9P2E5 772 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 NIP7Q9Y221 180 aaKnown RBP eCLIP16.14■□□□□ 0.17
SLIRP-209ENST00000557342 ARFGEF1Q9Y6D6 1849 aa16.14■□□□□ 0.17
SLIRP-209ENST00000557342 ATP10DQ9P241 1426 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 A0A0G2JLW4 131 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 ELL2O00472 640 aaPredicted RBP16.13■□□□□ 0.17
SLIRP-209ENST00000557342 ANXA1P04083 346 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 ST5P78524 1137 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 COPS6Q7L5N1 327 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 CNBD1Q8NA66 436 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 ZBTB3Q9H5J0 574 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 HYPKQ9NX55 129 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 PDZRN3Q9UPQ7 1066 aa16.13■□□□□ 0.17
SLIRP-209ENST00000557342 DPEP1P16444 411 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 GOLGA2Q08379 1002 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 CCDC30Q5VVM6 783 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 PRR5LQ6MZQ0 368 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 TPTE2Q6XPS3 522 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 GIGYF2Q6Y7W6 1299 aaKnown RBP16.12■□□□□ 0.17
SLIRP-209ENST00000557342 NBPF5PQ86XG9 351 aaPredicted RBP16.12■□□□□ 0.17
SLIRP-209ENST00000557342 XAGE3Q8WTP9 111 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
SLIRP-209ENST00000557342 YBX3P16989 372 aaKnown RBP eCLIP16.11■□□□□ 0.17
SLIRP-209ENST00000557342 PDE6BP35913 854 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 AIMP1Q12904 312 aaKnown RBP16.11■□□□□ 0.17
SLIRP-209ENST00000557342 HSP90AB3PQ58FF7 597 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 MIER1Q8N108 512 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 BRIP1Q9BX63 1249 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 MYH16Q9H6N6 1097 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 PIM2Q9P1W9 311 aa16.11■□□□□ 0.17
SLIRP-209ENST00000557342 TWISTNBQ3B726 338 aaPredicted RBP16.1■□□□□ 0.17
SLIRP-209ENST00000557342 TSPYL6Q8N831 410 aa16.1■□□□□ 0.17
SLIRP-209ENST00000557342 NYXQ9GZU5 481 aa16.1■□□□□ 0.17
SLIRP-209ENST00000557342 ARFGEF2Q9Y6D5 1785 aa16.1■□□□□ 0.17
SLIRP-209ENST00000557342 H0YIN7 160 aa16.09■□□□□ 0.17
SLIRP-209ENST00000557342 KCNA3P22001 575 aa16.09■□□□□ 0.17
SLIRP-209ENST00000557342 GTF2E1P29083 439 aaPredicted RBP16.09■□□□□ 0.17
SLIRP-209ENST00000557342 ZNF34Q8IZ26 560 aa16.09■□□□□ 0.17
SLIRP-209ENST00000557342 PLBD2Q8NHP8 589 aa16.09■□□□□ 0.17
SLIRP-209ENST00000557342 ZNF521Q96K83 1311 aa16.09■□□□□ 0.17
SLIRP-209ENST00000557342 IBTKQ9P2D0 1353 aaPredicted RBP16.09■□□□□ 0.17
SLIRP-209ENST00000557342 CHRNA5P30532 468 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 PARP10Q53GL7 1025 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 ANKRD13DQ6ZTN6 518 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 C2CD5Q86YS7 1000 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 STK31Q9BXU1 1019 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 BCS1LQ9Y276 419 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 COL11A2P13942 1736 aaPredicted RBP16.08■□□□□ 0.16
SLIRP-209ENST00000557342 CACNA1SQ13698 1873 aa16.08■□□□□ 0.16
SLIRP-209ENST00000557342 FAM177BA6PVY3 158 aa16.07■□□□□ 0.16
SLIRP-209ENST00000557342 GPTP24298 496 aa16.07■□□□□ 0.16
SLIRP-209ENST00000557342 DALRD3Q5D0E6 543 aaKnown RBP16.07■□□□□ 0.16
SLIRP-209ENST00000557342 PPP1R42Q7Z4L9 355 aa16.07■□□□□ 0.16
SLIRP-209ENST00000557342 WWC3Q9ULE0 1092 aa16.07■□□□□ 0.16
SLIRP-209ENST00000557342 EXOSC9Q06265 439 aaKnown RBP16.06■□□□□ 0.16
SLIRP-209ENST00000557342 TCIRG1Q13488 830 aa16.06■□□□□ 0.16
SLIRP-209ENST00000557342 CCDC24Q8N4L8 307 aa16.06■□□□□ 0.16
SLIRP-209ENST00000557342 SPINK5Q9NQ38 1064 aaPredicted RBP16.06■□□□□ 0.16
SLIRP-209ENST00000557342 UBN2Q6ZU65 1347 aa16.05■□□□□ 0.16
SLIRP-209ENST00000557342 DDX58O95786 925 aaKnown RBP16.05■□□□□ 0.16
SLIRP-209ENST00000557342 YY1P25490 414 aa16.05■□□□□ 0.16
SLIRP-209ENST00000557342 SUSD4Q5VX71 490 aa16.05■□□□□ 0.16
SLIRP-209ENST00000557342 RIC3Q7Z5B4 369 aa16.05■□□□□ 0.16
SLIRP-209ENST00000557342 RNF123Q5XPI4 1314 aa16.04■□□□□ 0.16
SLIRP-209ENST00000557342 E9PSI1 815 aa16.04■□□□□ 0.16
SLIRP-209ENST00000557342 VAMP4O75379 141 aa16.04■□□□□ 0.16
SLIRP-209ENST00000557342 TTLL6Q8N841 843 aa16.04■□□□□ 0.16
SLIRP-209ENST00000557342 PHAXQ9H814 394 aaKnown RBP16.04■□□□□ 0.16
SLIRP-209ENST00000557342 RIC1Q4ADV7 1423 aa16.03■□□□□ 0.16
SLIRP-209ENST00000557342 NTSR2O95665 410 aa16.03■□□□□ 0.16
SLIRP-209ENST00000557342 STYK1Q6J9G0 422 aa16.03■□□□□ 0.16
SLIRP-209ENST00000557342 ZNF622Q969S3 477 aaKnown RBP eCLIP16.03■□□□□ 0.16
SLIRP-209ENST00000557342 MASTLQ96GX5 879 aa16.03■□□□□ 0.16
SLIRP-209ENST00000557342 UTP14AQ9BVJ6 771 aaKnown RBP16.03■□□□□ 0.16
SLIRP-209ENST00000557342 TNRC6CQ9HCJ0 1690 aaKnown RBP16.02■□□□□ 0.16
SLIRP-209ENST00000557342 KLRG2A4D1S0 409 aaPredicted RBP16.02■□□□□ 0.16
SLIRP-209ENST00000557342 SLC4A2P04920 1241 aa16.02■□□□□ 0.16
SLIRP-209ENST00000557342 SRGNP10124 158 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms