RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 TEX13AQ9BXU3 409 aaPredicted RBP12.67□□□□□ -0.38
SRP54-210ENST00000556380 OCEL1Q9H607 264 aa12.67□□□□□ -0.38
SRP54-210ENST00000556380 TJP1Q07157 1748 aa12.67□□□□□ -0.38
SRP54-210ENST00000556380 QSER1Q2KHR3 1735 aa12.67□□□□□ -0.38
SRP54-210ENST00000556380 COL5A3P25940 1745 aaPredicted RBP12.66□□□□□ -0.38
SRP54-210ENST00000556380 PRAMEF22A3QJZ6 481 aa12.66□□□□□ -0.38
SRP54-210ENST00000556380 ZNF853P0CG23 659 aa12.66□□□□□ -0.38
SRP54-210ENST00000556380 EIF4A1P60842 406 aaKnown RBP12.66□□□□□ -0.38
SRP54-210ENST00000556380 CCDC87Q9NVE4 849 aa12.66□□□□□ -0.38
SRP54-210ENST00000556380 RTCBQ9Y3I0 505 aaKnown RBP12.66□□□□□ -0.38
SRP54-210ENST00000556380 TUBGCP6Q96RT7 1819 aa12.66□□□□□ -0.38
SRP54-210ENST00000556380 STARD3NLO95772 234 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 SNRPA1P09661 255 aaKnown RBP12.65□□□□□ -0.38
SRP54-210ENST00000556380 CCDC27Q2M243 656 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 TRAPPC3LQ5T215 181 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 ARHGEF1Q92888 912 aaKnown RBP12.65□□□□□ -0.38
SRP54-210ENST00000556380 USP16Q9Y5T5 823 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 LRP5O75197 1615 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 UBR3Q6ZT12 1888 aa12.65□□□□□ -0.38
SRP54-210ENST00000556380 SOS1Q07889 1333 aaPredicted RBP12.64□□□□□ -0.39
SRP54-210ENST00000556380 GIGYF1O75420 1035 aaPredicted RBP12.64□□□□□ -0.39
SRP54-210ENST00000556380 PHF14O94880 888 aa12.64□□□□□ -0.39
SRP54-210ENST00000556380 FAM9BQ8IZU0 186 aa12.64□□□□□ -0.39
SRP54-210ENST00000556380 TSPYL4Q9UJ04 414 aa12.64□□□□□ -0.39
SRP54-210ENST00000556380 ZBTB1Q9Y2K1 713 aa12.64□□□□□ -0.39
SRP54-210ENST00000556380 A1BGP04217 495 aa12.63□□□□□ -0.39
SRP54-210ENST00000556380 EIF5P55010 431 aaKnown RBP12.63□□□□□ -0.39
SRP54-210ENST00000556380 GOLGA2Q08379 1002 aa12.63□□□□□ -0.39
SRP54-210ENST00000556380 PDAP1Q13442 181 aaKnown RBP12.63□□□□□ -0.39
SRP54-210ENST00000556380 CFAP44Q96MT7 982 aa12.63□□□□□ -0.39
SRP54-210ENST00000556380 KDM3BQ7LBC6 1761 aa12.62□□□□□ -0.39
SRP54-210ENST00000556380 SENP3-EIF4A1A0A087X0R7 540 aa12.62□□□□□ -0.39
SRP54-210ENST00000556380 WWC1Q8IX03 1113 aa12.62□□□□□ -0.39
SRP54-210ENST00000556380 NBPF26B4DH59 902 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 GYS1P13807 737 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 MSL1Q68DK7 614 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 NBPF10Q6P3W6 841 aaKnown RBP12.61□□□□□ -0.39
SRP54-210ENST00000556380 NBPF15Q8N660 670 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 IFT57Q9NWB7 429 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 COL24A1Q17RW2 1714 aa12.61□□□□□ -0.39
SRP54-210ENST00000556380 CANXP27824 592 aaKnown RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 RFC4P35249 363 aa12.6□□□□□ -0.39
SRP54-210ENST00000556380 IL6STP40189 918 aaPredicted RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 CALD1Q05682 793 aaKnown RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 MKRN3Q13064 507 aaKnown RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 ARXQ96QS3 562 aa12.6□□□□□ -0.39
SRP54-210ENST00000556380 MBIPQ9NS73 344 aa12.6□□□□□ -0.39
SRP54-210ENST00000556380 SRP68Q9UHB9 627 aaKnown RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 USP42Q9H9J4 1324 aaKnown RBP12.6□□□□□ -0.39
SRP54-210ENST00000556380 KRT24Q2M2I5 525 aa12.59□□□□□ -0.39
SRP54-210ENST00000556380 NLGN1Q8N2Q7 840 aa12.59□□□□□ -0.39
SRP54-210ENST00000556380 FAM163AQ96GL9 167 aaPredicted RBP12.59□□□□□ -0.39
SRP54-210ENST00000556380 NARFQ9UHQ1 456 aa12.59□□□□□ -0.39
SRP54-210ENST00000556380 LAS1LQ9Y4W2 734 aaKnown RBP12.59□□□□□ -0.39
SRP54-210ENST00000556380 IL16Q14005 1332 aa12.59□□□□□ -0.39
SRP54-210ENST00000556380 COL15A1P39059 1388 aa12.58□□□□□ -0.4
SRP54-210ENST00000556380 POLD1P28340 1107 aa12.58□□□□□ -0.4
SRP54-210ENST00000556380 PIP4K2AP48426 406 aaPredicted RBP12.58□□□□□ -0.4
SRP54-210ENST00000556380 GNAI1P63096 354 aa12.58□□□□□ -0.4
SRP54-210ENST00000556380 NGEFQ8N5V2 710 aa12.58□□□□□ -0.4
SRP54-210ENST00000556380 BCL2L12Q9HB09 334 aa12.58□□□□□ -0.4
SRP54-210ENST00000556380 A0A087WZG4 1122 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 POTEMA6NI47 508 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 TM4SF1P30408 202 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 PDIA6Q15084 440 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 USPL1Q5W0Q7 1092 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 LRP10Q7Z4F1 713 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 WDR63Q8IWG1 891 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 ZNF521Q96K83 1311 aa12.57□□□□□ -0.4
SRP54-210ENST00000556380 ZPR1O75312 459 aa12.56□□□□□ -0.4
SRP54-210ENST00000556380 MMP10P09238 476 aa12.56□□□□□ -0.4
SRP54-210ENST00000556380 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
SRP54-210ENST00000556380 PDCD7Q8N8D1 485 aaKnown RBP12.56□□□□□ -0.4
SRP54-210ENST00000556380 SLAIN1Q8ND83 568 aa12.56□□□□□ -0.4
SRP54-210ENST00000556380 PPP1R1BQ9UD71 204 aaPredicted RBP12.56□□□□□ -0.4
SRP54-210ENST00000556380 SALL2Q9Y467 1007 aaPredicted RBP12.56□□□□□ -0.4
SRP54-210ENST00000556380 CAMTA2O94983 1202 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 HOXB7P09629 217 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 DDR1Q08345 913 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 LCE2DQ5TA82 110 aaPredicted RBP12.55□□□□□ -0.4
SRP54-210ENST00000556380 C8orf58Q8NAV2 365 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 SYT17Q9BSW7 474 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 FHDC1Q9C0D6 1143 aaPredicted RBP12.55□□□□□ -0.4
SRP54-210ENST00000556380 TBC1D2BQ9UPU7 963 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 ERBB4Q15303 1308 aa12.55□□□□□ -0.4
SRP54-210ENST00000556380 C4AP0C0L4 1744 aa12.54□□□□□ -0.4
SRP54-210ENST00000556380 EIF2S2P20042 333 aaKnown RBP12.54□□□□□ -0.4
SRP54-210ENST00000556380 PROSER3Q2NL68 480 aa12.54□□□□□ -0.4
SRP54-210ENST00000556380 DUSP27Q5VZP5 1158 aa12.54□□□□□ -0.4
SRP54-210ENST00000556380 RGL2O15211 777 aa12.53□□□□□ -0.4
SRP54-210ENST00000556380 NFIXQ14938 502 aa12.53□□□□□ -0.4
SRP54-210ENST00000556380 DZIP3Q86Y13 1208 aaKnown RBP12.53□□□□□ -0.4
SRP54-210ENST00000556380 TSR2Q969E8 191 aaKnown RBP12.53□□□□□ -0.4
SRP54-210ENST00000556380 POLRMTO00411 1230 aaKnown RBP12.52□□□□□ -0.41
SRP54-210ENST00000556380 TTLL7Q6ZT98 887 aa12.52□□□□□ -0.41
SRP54-210ENST00000556380 TSPYL6Q8N831 410 aa12.52□□□□□ -0.41
SRP54-210ENST00000556380 ZNF330Q9Y3S2 320 aaPredicted RBP12.52□□□□□ -0.41
SRP54-210ENST00000556380 CD2APQ9Y5K6 639 aa12.52□□□□□ -0.41
SRP54-210ENST00000556380 ANXA1P04083 346 aa12.51□□□□□ -0.41
SRP54-210ENST00000556380 MYL6BP14649 208 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms