RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 GPBP1L1Q9HC44 474 aaPredicted RBP12.32□□□□□ -0.44
VIPAS39-207ENST00000555854 TIAM2Q8IVF5 1701 aa12.31□□□□□ -0.44
VIPAS39-207ENST00000555854 TMPOP42166 694 aaKnown RBP12.31□□□□□ -0.44
VIPAS39-207ENST00000555854 C9orf131Q5VYM1 1079 aa12.31□□□□□ -0.44
VIPAS39-207ENST00000555854 CCDC146Q8IYE0 955 aa12.31□□□□□ -0.44
VIPAS39-207ENST00000555854 CACNA1SQ13698 1873 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 SENP3-EIF4A1A0A087X0R7 540 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 NFKBIEO00221 500 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 HLFQ16534 295 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 POTEHQ6S545 545 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 LRP10Q7Z4F1 713 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 PNISRQ8TF01 805 aaKnown RBP12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 PRKRIP1Q9H875 184 aaPredicted RBP12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 RRP7AQ9Y3A4 280 aaKnown RBP12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 SLX4Q8IY92 1834 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 ABCC12Q96J65 1359 aa12.3□□□□□ -0.44
VIPAS39-207ENST00000555854 FER1L6Q2WGJ9 1857 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 NEFMP07197 916 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 RIPK4P57078 832 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 CNBD1Q8NA66 436 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 BRIP1Q9BX63 1249 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 NMRK2Q9NPI5 230 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 NUP98P52948 1817 aa12.29□□□□□ -0.44
VIPAS39-207ENST00000555854 RGL2O15211 777 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 CLEC4GQ6UXB4 293 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 TTLL7Q6ZT98 887 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 TTLL6Q8N841 843 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 SETDB2Q96T68 719 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 RNF181Q9P0P0 153 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
VIPAS39-207ENST00000555854 H0YIN7 160 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 PDIA6Q15084 440 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 KRT24Q2M2I5 525 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 PROSER3Q2NL68 480 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 TSPYL4Q9UJ04 414 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 ADAMTS8Q9UP79 889 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 UBN2Q6ZU65 1347 aa12.27□□□□□ -0.45
VIPAS39-207ENST00000555854 SRGNP10124 158 aa12.26□□□□□ -0.45
VIPAS39-207ENST00000555854 PNNQ9H307 717 aaKnown RBP12.26□□□□□ -0.45
VIPAS39-207ENST00000555854 NIP7Q9Y221 180 aaKnown RBP eCLIP12.26□□□□□ -0.45
VIPAS39-207ENST00000555854 MAP3K15Q6ZN16 1313 aa12.26□□□□□ -0.45
VIPAS39-207ENST00000555854 SNED1Q8TER0 1413 aa12.26□□□□□ -0.45
VIPAS39-207ENST00000555854 CCDC88AQ3V6T2 1871 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 KLRG2A4D1S0 409 aaPredicted RBP12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 ANXA1P04083 346 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 MYL6BP14649 208 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 PDE6BP35913 854 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 ST5P78524 1137 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 NPM2Q86SE8 214 aaKnown RBP12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 NBPF5PQ86XG9 351 aaPredicted RBP12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 NGEFQ8N5V2 710 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 ZNF622Q969S3 477 aaKnown RBP eCLIP12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 RUNDC1Q96C34 613 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 ZNF652Q9Y2D9 606 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 ERBB4Q15303 1308 aa12.25□□□□□ -0.45
VIPAS39-207ENST00000555854 C21orf2O43822 256 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 LMOD3Q0VAK6 560 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 NEUROD2Q15784 382 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 RIC1Q4ADV7 1423 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 ANKRD36CQ5JPF3 1778 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 STYK1Q6J9G0 422 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 SLC51AQ86UW1 340 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 ZBTB3Q9H5J0 574 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 BABAM1Q9NWV8 329 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 IBTKQ9P2D0 1353 aaPredicted RBP12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 ZNF219Q9P2Y4 722 aaPredicted RBP12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 PDZRN3Q9UPQ7 1066 aa12.24□□□□□ -0.45
VIPAS39-207ENST00000555854 DICER1Q9UPY3 1922 aaKnown RBP12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 FAM177BA6PVY3 158 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 ERVV-1B6SEH8 477 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 CHL1O00533 1208 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 LMNB1P20700 586 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 WDR43Q15061 677 aaKnown RBP eCLIP12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 CCDC184Q52MB2 194 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 C7orf43Q8WVR3 580 aa12.23□□□□□ -0.45
VIPAS39-207ENST00000555854 LTBP3Q9NS15 1303 aa12.22□□□□□ -0.45
VIPAS39-207ENST00000555854 ZC3H4Q9UPT8 1303 aaKnown RBP12.22□□□□□ -0.45
VIPAS39-207ENST00000555854 OLFM4Q6UX06 510 aa12.22□□□□□ -0.45
VIPAS39-207ENST00000555854 NUTM1Q86Y26 1132 aa12.22□□□□□ -0.45
VIPAS39-207ENST00000555854 MASTLQ96GX5 879 aa12.22□□□□□ -0.45
VIPAS39-207ENST00000555854 WDR90Q96KV7 1748 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 NTSR2O95665 410 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 HSPA6P17066 643 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 EIF2S2P20042 333 aaKnown RBP12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 GPTP24298 496 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 CRY2Q49AN0 593 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 KIF6Q6ZMV9 814 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 C3orf67Q6ZVT6 689 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 ZNF34Q8IZ26 560 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 CNKSR1Q969H4 720 aa12.21□□□□□ -0.45
VIPAS39-207ENST00000555854 COL4A5P29400 1685 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 PCNTO95613 3336 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 NPHP1O15259 732 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 ERFEQ4G0M1 354 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 SUSD4Q5VX71 490 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 TPTE2Q6XPS3 522 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 GIGYF2Q6Y7W6 1299 aaKnown RBP12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 NECTIN2Q92692 538 aa12.2□□□□□ -0.46
VIPAS39-207ENST00000555854 LAMB2P55268 1798 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms