RNA–Protein interactions for RNA: ENST00000554956.5

PSMC6-208, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-208	ENST00000554956	ZCCHC2	Q9C0B9	1178 aa	Known RBP	9.66	□□□□□ -0.86
PSMC6-208	ENST00000554956	FKBP5	Q13451	457 aa	Predicted RBP	9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	LBR	Q14739	615 aa	Known RBP	9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	OCLN	Q16625	522 aa		9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	FOXR1	Q6PIV2	292 aa		9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	ABHD17A	Q96GS6	310 aa		9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	HSH2D	Q96JZ2	352 aa		9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	TRERF1	Q96PN7	1200 aa		9.65	□□□□□ -0.86
PSMC6-208	ENST00000554956	CARNS1	A5YM72	827 aa		9.64	□□□□□ -0.87
PSMC6-208	ENST00000554956	BNIP3L	O60238	219 aa		9.64	□□□□□ -0.87
PSMC6-208	ENST00000554956	LRRC69	Q6ZNQ3	347 aa		9.64	□□□□□ -0.87
PSMC6-208	ENST00000554956	NLRP8	Q86W28	1048 aa		9.64	□□□□□ -0.87
PSMC6-208	ENST00000554956	ATAD2B	Q9ULI0	1458 aa		9.64	□□□□□ -0.87
PSMC6-208	ENST00000554956	DCDC2B	A2VCK2	349 aa		9.63	□□□□□ -0.87
PSMC6-208	ENST00000554956	C1orf53	Q5VUE5	145 aa		9.63	□□□□□ -0.87
PSMC6-208	ENST00000554956	NDFIP2	Q9NV92	336 aa		9.63	□□□□□ -0.87
PSMC6-208	ENST00000554956	HCN2	Q9UL51	889 aa		9.63	□□□□□ -0.87
PSMC6-208	ENST00000554956	GJA3	Q9Y6H8	435 aa		9.63	□□□□□ -0.87
PSMC6-208	ENST00000554956	ATXN7	O15265	892 aa	Predicted RBP	9.62	□□□□□ -0.87
PSMC6-208	ENST00000554956	FOXO3	O43524	673 aa		9.62	□□□□□ -0.87
PSMC6-208	ENST00000554956	LOR	P23490	312 aa	Predicted RBP	9.62	□□□□□ -0.87
PSMC6-208	ENST00000554956	ZNF280C	Q8ND82	737 aa		9.62	□□□□□ -0.87
PSMC6-208	ENST00000554956	CLP1	Q92989	425 aa	Known RBP	9.62	□□□□□ -0.87
PSMC6-208	ENST00000554956	TMEM88B	A6NKF7	163 aa		9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	FIGNL1	Q6PIW4	674 aa		9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	CAPN12	Q6ZSI9	719 aa		9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	MKNK1	Q9BUB5	465 aa		9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	CXXC1	Q9P0U4	656 aa	Predicted RBP	9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	PCDHGC4	Q9Y5F7	938 aa		9.61	□□□□□ -0.87
PSMC6-208	ENST00000554956	VTI1A	Q96AJ9	217 aa		9.6	□□□□□ -0.87
PSMC6-208	ENST00000554956	CFHR5	Q9BXR6	569 aa		9.6	□□□□□ -0.87
PSMC6-208	ENST00000554956	QTRT2	Q9H974	415 aa	Known RBP	9.6	□□□□□ -0.87
PSMC6-208	ENST00000554956	MBIP	Q9NS73	344 aa		9.6	□□□□□ -0.87
PSMC6-208	ENST00000554956	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	9.6	□□□□□ -0.87
PSMC6-208	ENST00000554956	KHNYN	O15037	678 aa	Known RBP	9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	ADAMTS2	O95450	1211 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	MX2	P20592	715 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	FGFR3	P22607	806 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	ATP2B4	P23634	1241 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	SUSD3	Q96L08	255 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	NEUROD4	Q9HD90	331 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	PHF24	Q9UPV7	400 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	GPC6	Q9Y625	555 aa	Predicted RBP	9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	IGF1R	P08069	1367 aa		9.59	□□□□□ -0.87
PSMC6-208	ENST00000554956	MAPT	P10636	758 aa	Known RBP	9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	CD33	P20138	364 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	CTBS	Q01459	385 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	TNP2	Q05952	138 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	RTN1	Q16799	776 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	SAMD5	Q5TGI4	173 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	WHAMM	Q8TF30	809 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	STRN4	Q9NRL3	753 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	KLK14	Q9P0G3	267 aa		9.58	□□□□□ -0.88
PSMC6-208	ENST00000554956	FAM157B	P0CG42	384 aa		9.57	□□□□□ -0.88
PSMC6-208	ENST00000554956	SCNN1A	P37088	669 aa		9.57	□□□□□ -0.88
PSMC6-208	ENST00000554956	INSM1	Q01101	510 aa	Predicted RBP	9.57	□□□□□ -0.88
PSMC6-208	ENST00000554956	ZSCAN1	Q8NBB4	408 aa		9.57	□□□□□ -0.88
PSMC6-208	ENST00000554956	BCS1L	Q9Y276	419 aa		9.57	□□□□□ -0.88
PSMC6-208	ENST00000554956	NES	P48681	1621 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	C2CD2L	O14523	706 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	EFS	O43281	561 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	SLURP2	P0DP57	97 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	SRSF11	Q05519	484 aa	Known RBP	9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	DGKZ	Q13574	1117 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	GRIN2C	Q14957	1233 aa		9.56	□□□□□ -0.88
PSMC6-208	ENST00000554956	ERCC6	Q03468	1493 aa		9.55	□□□□□ -0.88
PSMC6-208	ENST00000554956	SAP130	Q9H0E3	1048 aa		9.55	□□□□□ -0.88
PSMC6-208	ENST00000554956	LRFN2	Q9ULH4	789 aa		9.55	□□□□□ -0.88
PSMC6-208	ENST00000554956	SMARCA4	P51532	1647 aa		9.55	□□□□□ -0.88
PSMC6-208	ENST00000554956	BMP4	P12644	408 aa		9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	TYRO3	Q06418	890 aa		9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	NAA30	Q147X3	362 aa	Predicted RBP	9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	COX20	Q5RI15	118 aa		9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	RETREG2	Q8NC44	543 aa		9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	CEP63	Q96MT8	703 aa		9.54	□□□□□ -0.88
PSMC6-208	ENST00000554956	CUX2	O14529	1486 aa		9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	SFSWAP	Q12872	951 aa	Known RBP	9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	ZNF385C	Q66K41	422 aa	Predicted RBP	9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	BTLA	Q7Z6A9	289 aa		9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	MYO19	Q96H55	970 aa		9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	ANKIB1	Q9P2G1	1089 aa		9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	SEPT3	Q9UH03	358 aa		9.53	□□□□□ -0.88
PSMC6-208	ENST00000554956	HMGXB3	Q12766	1538 aa		9.52	□□□□□ -0.88
PSMC6-208	ENST00000554956	TGFBR3L	H3BV60	316 aa		9.52	□□□□□ -0.89
PSMC6-208	ENST00000554956	SMARCA2	P51531	1590 aa		9.52	□□□□□ -0.89
PSMC6-208	ENST00000554956	LYPD4	Q6UWN0	246 aa		9.52	□□□□□ -0.89
PSMC6-208	ENST00000554956	ACD	Q96AP0	544 aa		9.52	□□□□□ -0.89
PSMC6-208	ENST00000554956	BRD7	Q9NPI1	651 aa		9.52	□□□□□ -0.89
PSMC6-208	ENST00000554956	MARK1	Q9P0L2	795 aa		9.51	□□□□□ -0.89
PSMC6-208	ENST00000554956	NSFL1C	Q9UNZ2	370 aa	Known RBP	9.51	□□□□□ -0.89
PSMC6-208	ENST00000554956	MROH2B	Q7Z745	1585 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	SSFA2	P28290	1259 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	MAP2K3	P46734	347 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	FAM26D	Q5JW98	314 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	PHLDB3	Q6NSJ2	640 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	C16orf46	Q6P387	395 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	SVOP	Q8N4V2	548 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	COL26A1	Q96A83	441 aa		9.5	□□□□□ -0.89
PSMC6-208	ENST00000554956	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.5	□□□□□ -0.89	1e-8	■■■■■ 43.5
PSMC6-208	ENST00000554956	DMGDH	Q9UI17	866 aa	Known RBP	9.5	□□□□□ -0.89

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms