RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 NGEFQ8N5V2 710 aa16.19■□□□□ 0.18
SHMT2-214ENST00000554604 BABAM1Q9NWV8 329 aa16.19■□□□□ 0.18
SHMT2-214ENST00000554604 NUP98P52948 1817 aa16.19■□□□□ 0.18
SHMT2-214ENST00000554604 C2CD5Q86YS7 1000 aa16.18■□□□□ 0.18
SHMT2-214ENST00000554604 CNBD1Q8NA66 436 aa16.18■□□□□ 0.18
SHMT2-214ENST00000554604 LAS1LQ9Y4W2 734 aaKnown RBP16.18■□□□□ 0.18
SHMT2-214ENST00000554604 ATP10DQ9P241 1426 aa16.18■□□□□ 0.18
SHMT2-214ENST00000554604 MYL6BP14649 208 aa16.17■□□□□ 0.18
SHMT2-214ENST00000554604 PDE6BP35913 854 aa16.17■□□□□ 0.18
SHMT2-214ENST00000554604 ST5P78524 1137 aa16.17■□□□□ 0.18
SHMT2-214ENST00000554604 PRR5LQ6MZQ0 368 aa16.17■□□□□ 0.18
SHMT2-214ENST00000554604 CACNA1SQ13698 1873 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 NBPF5PQ86XG9 351 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-214ENST00000554604 CCDC24Q8N4L8 307 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 TTLL6Q8N841 843 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 ZNF526Q8TF50 670 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-214ENST00000554604 BRIP1Q9BX63 1249 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 PDZRN3Q9UPQ7 1066 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 NIP7Q9Y221 180 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHMT2-214ENST00000554604 SBF1O95248 1867 aa16.16■□□□□ 0.18
SHMT2-214ENST00000554604 ADCY9O60503 1353 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 RGL2O15211 777 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 EIF2S2P20042 333 aaKnown RBP16.15■□□□□ 0.18
SHMT2-214ENST00000554604 CCDC88AQ3V6T2 1871 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 KIF6Q6ZMV9 814 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 GPBP1L1Q9HC44 474 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-214ENST00000554604 TRIM35Q9UPQ4 493 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 ERBB4Q15303 1308 aa16.15■□□□□ 0.18
SHMT2-214ENST00000554604 ZNF622Q969S3 477 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHMT2-214ENST00000554604 SUPT16HQ9Y5B9 1047 aaKnown RBP16.14■□□□□ 0.17
SHMT2-214ENST00000554604 COL11A2P13942 1736 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-214ENST00000554604 CHL1O00533 1208 aa16.13■□□□□ 0.17
SHMT2-214ENST00000554604 APAF1O14727 1248 aa16.13■□□□□ 0.17
SHMT2-214ENST00000554604 HLFQ16534 295 aa16.13■□□□□ 0.17
SHMT2-214ENST00000554604 TPTE2Q6XPS3 522 aa16.13■□□□□ 0.17
SHMT2-214ENST00000554604 MAP3K15Q6ZN16 1313 aa16.13■□□□□ 0.17
SHMT2-214ENST00000554604 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
SHMT2-214ENST00000554604 ERVV-1B6SEH8 477 aa16.12■□□□□ 0.17
SHMT2-214ENST00000554604 GTF2E1P29083 439 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-214ENST00000554604 TTLL7Q6ZT98 887 aa16.12■□□□□ 0.17
SHMT2-214ENST00000554604 C9orf131Q5VYM1 1079 aa16.11■□□□□ 0.17
SHMT2-214ENST00000554604 NECTIN2Q92692 538 aa16.11■□□□□ 0.17
SHMT2-214ENST00000554604 ZBTB3Q9H5J0 574 aa16.11■□□□□ 0.17
SHMT2-214ENST00000554604 SENP3-EIF4A1A0A087X0R7 540 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 NEFLP07196 543 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 C1QTNF8P60827 252 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 CALD1Q05682 793 aaKnown RBP16.1■□□□□ 0.17
SHMT2-214ENST00000554604 CFAP44Q96MT7 982 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 RNF181Q9P0P0 153 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 SLX4Q8IY92 1834 aa16.1■□□□□ 0.17
SHMT2-214ENST00000554604 CNKSR1Q969H4 720 aa16.09■□□□□ 0.17
SHMT2-214ENST00000554604 NYXQ9GZU5 481 aa16.09■□□□□ 0.17
SHMT2-214ENST00000554604 ZNF219Q9P2Y4 722 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-214ENST00000554604 ARFGEF2Q9Y6D5 1785 aa16.08■□□□□ 0.17
SHMT2-214ENST00000554604 ANXA1P04083 346 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 SRGNP10124 158 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 GPTP24298 496 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 KRT24Q2M2I5 525 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 STYK1Q6J9G0 422 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 MASTLQ96GX5 879 aa16.08■□□□□ 0.16
SHMT2-214ENST00000554604 RASSF7Q02833 373 aa16.07■□□□□ 0.16
SHMT2-214ENST00000554604 PDIA6Q15084 440 aa16.07■□□□□ 0.16
SHMT2-214ENST00000554604 PROSER3Q2NL68 480 aa16.07■□□□□ 0.16
SHMT2-214ENST00000554604 GIGYF2Q6Y7W6 1299 aaKnown RBP16.07■□□□□ 0.16
SHMT2-214ENST00000554604 FER1L6Q2WGJ9 1857 aa16.07■□□□□ 0.16
SHMT2-214ENST00000554604 ANKRD36CQ5JPF3 1778 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 C21orf2O43822 256 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 HOXB7P09629 217 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 NPR1P16066 1061 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 GNAI1P63096 354 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 AIMP1Q12904 312 aaKnown RBP16.06■□□□□ 0.16
SHMT2-214ENST00000554604 HDGFL1Q5TGJ6 251 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 DDX21Q9NR30 783 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-214ENST00000554604 MBIPQ9NS73 344 aa16.06■□□□□ 0.16
SHMT2-214ENST00000554604 LMNB1P20700 586 aa16.05■□□□□ 0.16
SHMT2-214ENST00000554604 PRPF40BQ6NWY9 871 aaKnown RBP16.05■□□□□ 0.16
SHMT2-214ENST00000554604 COPS6Q7L5N1 327 aa16.05■□□□□ 0.16
SHMT2-214ENST00000554604 NUTM1Q86Y26 1132 aa16.05■□□□□ 0.16
SHMT2-214ENST00000554604 XAGE3Q8WTP9 111 aa16.05■□□□□ 0.16
SHMT2-214ENST00000554604 IFT57Q9NWB7 429 aa16.05■□□□□ 0.16
SHMT2-214ENST00000554604 DICER1Q9UPY3 1922 aaKnown RBP16.05■□□□□ 0.16
SHMT2-214ENST00000554604 UBN2Q6ZU65 1347 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 PARP10Q53GL7 1025 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 SOGA3Q5TF21 947 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 DUSP27Q5VZP5 1158 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 LRP10Q7Z4F1 713 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 PPP1R42Q7Z4L9 355 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 ZNF34Q8IZ26 560 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 CHPF2Q9P2E5 772 aa16.04■□□□□ 0.16
SHMT2-214ENST00000554604 TIAM2Q8IVF5 1701 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 KDM2BQ8NHM5 1336 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 KLRG2A4D1S0 409 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-214ENST00000554604 NFKBIEO00221 500 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 ZNF853P0CG23 659 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 ERFEQ4G0M1 354 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 SUSD4Q5VX71 490 aa16.03■□□□□ 0.16
SHMT2-214ENST00000554604 DBF4Q9UBU7 674 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-214ENST00000554604 IBTKQ9P2D0 1353 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-214ENST00000554604 TNRC6CQ9HCJ0 1690 aaKnown RBP16.02■□□□□ 0.16
SHMT2-214ENST00000554604 HSP90AB3PQ58FF7 597 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms